Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 5.2e-125 451.1 225 100.0
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 4.6e-89 331.6 220 79.1
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 9.3e-66 254.2 220 61.8
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 8.7e-56 221.1 224 54.5
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 1.9e-55 219.9 225 56.9
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 3.3e-55 219.2 224 54.0
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 9.6e-55 217.6 223 54.3
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 1.3e-54 217.2 225 56.0
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 4.8e-54 215.3 225 52.0
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 1.4e-53 213.8 223 53.4
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 1.8e-53 213.4 218 55.0
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 5.3e-53 211.8 224 52.2
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 6.9e-53 211.5 228 53.1
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 9.0e-53 211.1 225 53.8
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 9.0e-53 211.1 227 52.9
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 1.2e-52 210.7 229 54.6
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 1.5e-52 210.3 232 50.9
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 7.6e-52 208.0 223 52.5
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 9.9e-52 207.6 221 54.3
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 9.9e-52 207.6 223 51.6
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 1.7e-51 206.8 230 50.9
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 4.9e-51 205.3 220 52.7
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 8.4e-51 204.5 223 52.5
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 1.4e-50 203.8 223 55.6
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 1.4e-50 203.8 224 50.0
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.4e-50 203.8 218 52.8
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 1.4e-50 203.8 226 50.9
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.9e-50 203.4 220 53.2
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.9e-50 203.4 218 52.8
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 5.5e-50 201.8 227 50.2
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 2.7e-49 199.5 221 52.9
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 7.9e-49 198.0 233 48.5
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.8e-48 196.8 235 46.0
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 3.0e-48 196.1 223 49.8
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 3.9e-48 195.7 224 49.1
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 5.1e-48 195.3 232 48.3
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 2.5e-47 193.0 222 48.6
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 4.3e-47 192.2 229 48.0
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 9.6e-47 191.0 222 51.8
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 1.6e-46 190.3 226 50.0
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 1.6e-46 190.3 227 46.7
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 1.6e-46 190.3 222 48.2
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.1e-46 189.9 241 47.7
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 2.1e-46 189.9 227 48.5
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 2.8e-46 189.5 222 51.4
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 3.7e-46 189.1 215 51.6
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 4.8e-46 188.7 241 46.9
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 4.8e-46 188.7 236 45.8
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 6.2e-46 188.3 222 51.4
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 8.1e-46 188.0 223 48.4
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 1.1e-45 187.6 234 45.7
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 1.1e-45 187.6 222 49.5
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 1.4e-45 187.2 222 48.6
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 1.8e-45 186.8 223 48.9
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 2.4e-45 186.4 234 46.2
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 5.3e-45 185.3 220 48.6
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 6.9e-45 184.9 215 47.9
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 9.0e-45 184.5 232 48.3
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 1.5e-44 183.7 226 48.7
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 1.5e-44 183.7 235 45.1
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 2.0e-44 183.3 227 47.1
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 2.0e-44 183.3 222 48.2
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 2.6e-44 183.0 235 45.1
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 5.8e-44 181.8 238 44.5
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 1.7e-43 180.3 223 48.0
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 2.2e-43 179.9 223 48.0
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 2.2e-43 179.9 222 46.8
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 2.2e-43 179.9 223 48.4
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 2.9e-43 179.5 222 46.8
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 4.9e-43 178.7 240 43.8
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 6.5e-43 178.3 223 47.5
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 6.5e-43 178.3 229 46.3
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 3.2e-42 176.0 223 47.5
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 3.2e-42 176.0 227 44.9
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 5.5e-42 175.3 229 45.9
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 7.1e-42 174.9 227 45.8
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 1.2e-41 174.1 213 48.8
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 2.1e-41 173.3 231 46.3
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 2.1e-41 173.3 160 58.8
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 7.9e-41 171.4 220 48.2
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 7.9e-41 171.4 229 45.0
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 2.3e-40 169.9 222 43.7
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 5.1e-40 168.7 209 46.9
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 8.7e-40 167.9 224 46.0
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.1e-39 167.5 148 64.2
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 1.6e-38 163.7 213 41.3
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 6.3e-38 161.8 216 44.9
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 8.2e-38 161.4 211 45.5
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 1.8e-37 160.2 192 48.4
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.6e-36 156.4 97 83.5
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 1.7e-35 153.7 214 43.9
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 1.6e-33 147.1 216 42.1
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 6.7e-32 141.7 242 39.7
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 1.9e-31 140.2 196 46.4
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 8.2e-30 134.8 194 42.8
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 1.5e-28 130.6 166 44.6
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 7.4e-23 111.7 205 34.1
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 3.7e-22 109.4 108 57.4
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 4.8e-22 109.0 95 57.9
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.8e-21 107.1 87 64.4
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 4.1e-21 105.9 174 40.2
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 3.4e-20 102.8 136 47.1
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 1.3e-19 100.9 212 33.0
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 8.5e-19 98.2 221 38.0
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.1e-18 97.8 145 40.7
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 4.2e-18 95.9 218 35.3
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 5.5e-18 95.5 134 45.5
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 5.5e-18 95.5 134 45.5
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 4.7e-17 92.4 94 52.1
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 4.7e-17 92.4 94 52.1
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 1.0e-16 91.3 105 50.5
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 1.0e-16 91.3 187 32.1
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 2.3e-16 90.1 128 41.4
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 1.5e-15 87.4 87 52.9
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 1.5e-15 87.4 165 35.2
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 7.4e-15 85.1 189 32.3
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-13 80.5 139 35.3
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 9.1e-13 78.2 196 33.2
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 9.1e-13 78.2 98 41.8
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 6.1e-09 65.5 45 73.3


User provided reference genes

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