Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 0.0e+00 1120.1 579 100.0
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 2.1e-223 779.2 548 76.1
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.0e-201 707.2 477 81.6
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.6e-186 656.8 586 62.6
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.3e-185 653.7 603 59.0
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 4.8e-183 645.2 562 63.3
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 9.0e-182 641.0 560 62.5
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.6e-181 639.4 551 60.6
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 2.5e-176 622.9 546 63.6
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 2.8e-175 619.4 550 59.6
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.1e-174 617.5 587 55.0
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 6.9e-174 614.8 562 61.0
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 9.1e-174 614.4 598 57.4
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.5e-173 613.6 571 59.5
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.4e-171 607.1 550 60.9
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 4.7e-170 602.1 559 61.2
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 3.9e-169 599.0 563 60.0
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.1e-168 597.4 553 56.6
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.0e-168 596.7 563 59.7
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 4.4e-168 595.5 557 59.2
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 2.4e-166 589.7 554 57.0
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.0e-165 586.6 558 56.8
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 8.5e-164 581.3 586 55.3
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.9e-163 580.1 585 54.7
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.2e-163 578.9 585 54.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.1e-162 576.6 585 54.2
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 3.6e-162 575.9 569 57.8
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.4e-161 573.9 556 56.7
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.8e-161 573.5 585 54.0
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.4e-158 563.9 578 52.6
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.1e-158 562.4 585 55.6
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 7.0e-158 561.6 556 57.2
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 7.7e-157 558.1 557 58.0
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.9e-155 553.5 543 56.7
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 7.2e-155 551.6 537 54.6
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 9.4e-155 551.2 559 56.2
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 5.4e-150 535.4 564 55.5
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 8.5e-148 528.1 525 54.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 2.1e-146 523.5 553 55.2
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 6.1e-146 521.9 531 57.4
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 5.2e-145 518.8 553 56.1
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 5.2e-145 518.8 575 54.3
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.2e-144 517.7 554 52.7
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 8.3e-143 511.5 531 51.6
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 8.3e-143 511.5 583 53.2
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 7.7e-141 505.0 549 56.6
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.9e-140 503.1 550 54.7
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 4.3e-139 499.2 548 54.6
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.2e-138 497.7 557 50.4
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 5.7e-136 488.8 522 48.3
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.2e-135 486.9 540 53.9
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 9.2e-134 481.5 557 49.9
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.3e-132 477.6 530 52.5
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.6e-130 469.5 522 46.7
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.0e-129 468.0 578 50.2
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 2.3e-129 466.8 549 49.2
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.4e-126 456.8 578 49.0
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 3.2e-126 456.4 465 55.9
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 4.1e-126 456.1 559 51.2
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.2e-125 454.5 513 48.0
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.2e-125 454.5 569 47.3
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 7.8e-125 451.8 560 49.8
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 8.6e-124 448.4 562 48.0
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 9.5e-123 444.9 562 49.5
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 9.5e-123 444.9 558 49.3
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 5.2e-121 439.1 396 62.1
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 3.7e-119 433.0 558 47.1
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 4.9e-119 432.6 414 56.8
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 6.4e-119 432.2 537 47.3
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 7.1e-118 428.7 569 48.5
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 1.2e-117 427.9 566 45.8
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.1e-117 427.2 536 49.1
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 2.1e-117 427.2 556 43.9
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.7e-116 424.1 551 47.4
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 3.0e-116 423.3 566 48.8
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 5.2e-113 412.5 553 43.0
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.2e-109 401.4 565 44.4
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.1e-107 394.8 378 62.7
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.2e-106 391.3 559 47.6
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.6e-106 391.0 250 78.8
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.8e-105 387.5 559 44.9
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 2.4e-105 387.1 503 44.9
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 7.6e-104 382.1 488 44.7
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 7.1e-102 375.6 535 44.5
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 7.3e-99 365.5 369 53.7
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 6.9e-97 359.0 540 40.2
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 1.5e-96 357.8 402 49.5
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 4.2e-94 349.7 546 43.4
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.6e-93 347.8 476 48.7
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.1e-91 341.7 480 47.1
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 7.4e-91 339.0 563 37.5
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 1.2e-88 331.6 514 38.9
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.0e-88 330.9 564 38.8
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 7.6e-88 328.9 341 51.0
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 7.4e-83 312.4 513 37.8
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 4.8e-82 309.7 521 36.9
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 1.8e-81 307.8 155 96.1
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.7e-74 283.5 239 59.0
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.1e-73 282.0 255 56.1
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.4e-70 271.6 347 46.1
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.2e-64 251.9 309 47.2
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 2.5e-62 244.2 696 29.2
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 5.5e-62 243.0 309 44.3
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.2e-61 241.9 593 31.4
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.4e-54 218.4 358 36.9
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 7.2e-54 216.1 313 49.8
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 3.5e-48 197.2 124 71.0
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.2e-45 188.7 137 66.4
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 3.6e-45 187.2 256 49.2
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 8.2e-42 176.0 118 68.6
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 9.1e-41 172.6 143 60.8
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.5e-38 164.5 110 69.1
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 2.0e-35 154.8 706 24.6
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.0e-35 154.8 103 62.1
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.4e-35 153.7 117 63.2
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 7.5e-35 152.9 111 63.1
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.8e-33 148.3 95 63.2
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.4e-33 146.7 107 59.8
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 5.4e-33 146.7 107 65.4
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 9.1e-33 146.0 100 65.0
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 4.4e-27 127.1 92 64.1
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 3.7e-26 124.0 149 46.3
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 1.8e-25 121.7 94 60.6
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.6e-24 118.6 128 44.5
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 1.3e-23 115.5 90 53.3
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 9.5e-22 109.4 81 56.8
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 2.3e-20 104.8 398 26.4
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 1.2e-19 102.4 92 55.4
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.6e-19 101.3 119 49.6
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.4e-19 100.9 81 51.9
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.9e-18 97.1 84 46.4
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.4e-17 95.5 86 51.2
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 2.4e-17 94.7 78 61.5
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 9.5e-14 82.8 86 43.0
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-13 82.4 102 37.3
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.2e-11 75.9 75 49.3
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.0e-11 75.1 64 45.3
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.0e-11 75.1 76 42.1
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 5.8e-11 73.6 77 39.0
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.8e-11 73.6 69 47.8
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.8e-11 73.6 69 47.8
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 7.5e-11 73.2 54 66.7
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 2.2e-10 71.6 46 71.7
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.1e-09 69.3 90 32.2
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.9e-09 68.6 199 28.6
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.4e-09 68.2 57 50.9
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 5.4e-09 67.0 96 41.7
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.2e-09 66.2 46 58.7
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.0e-08 65.1 47 61.7
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.0e-08 65.1 115 28.7
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 3.9e-07 60.8 63 58.7
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 8.6e-07 59.7 42 64.3
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 7.3e-06 56.6 43 62.8


User provided reference genes

Program Settings