Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016663 Carpinus fangiana HOM05D008222 ORTHO05D010364 0.0e+00 1290.0 690 100.0
Haze_19673 Corylus avellana HOM05D008222 ORTHO05D010364 0.0e+00 1169.1 690 90.4
QL07p037571 Quercus lobata HOM05D008222 ORTHO05D010364 3.5e-225 785.4 701 66.3
CiPaw.10G014900 Carya illinoinensis HOM05D008222 ORTHO05D010364 4.8e-206 721.8 698 63.5
Dinv31739 Davidia involucrata HOM05D008222 ORTHO05D010364 6.8e-168 595.1 706 53.8
Potri.006G205800 Populus trichocarpa HOM05D008222 ORTHO05D010364 1.2e-156 557.8 700 51.9
Atru.chr8.1411 Acer truncatum HOM05D008222 ORTHO05D010364 4.7e-153 545.8 747 46.5
Ciclev10011213m.g Citrus clementina HOM05D008222 ORTHO05D010364 3.1e-152 543.1 699 49.4
GSVIVG01033924001 Vitis vinifera HOM05D008222 ORTHO05D010364 7.5e-151 538.5 701 51.1
CiPaw.09G018200 Carya illinoinensis HOM05D008222 ORTHO05D010364 9.8e-151 538.1 583 59.0
Sabra06G0158800 Salix brachista HOM05D008222 ORTHO05D010364 1.4e-149 534.3 698 50.7
TAR633G2678 Trochodendron aralioides HOM05D008222 ORTHO05D010364 5.6e-146 522.3 715 49.7
Manes.09G049300 Manihot esculenta HOM05D008222 ORTHO05D010364 3.6e-145 519.6 698 47.4
Cpa.g.sc104.69 Carica papaya HOM05D008222 ORTHO05D010364 4.7e-145 519.2 708 50.1
TAR636G2750 Trochodendron aralioides HOM05D008222 ORTHO05D010364 8.9e-144 515.0 705 48.8
COL.COLO4_29620 Corchorus olitorius HOM05D008222 ORTHO05D010364 4.4e-143 512.7 700 50.9
Thecc.05G099900 Theobroma cacao HOM05D008222 ORTHO05D010364 4.4e-143 512.7 710 47.6
CSS0016714 Camellia sinensis var. sinensis HOM05D008222 ORTHO05D010364 1.7e-134 484.2 725 47.9
Glyma.02G200000 Glycine max HOM05D008222 ORTHO05D010364 1.4e-128 464.5 706 45.9
Glyma.10G076700 Glycine max HOM05D008222 ORTHO05D010364 6.4e-126 455.7 706 47.0
Nn6g34773 Nelumbo nucifera HOM05D008222 ORTHO05D010364 6.2e-121 439.1 709 46.0
TWI77G0950 Tripterygium wilfordii HOM05D008222 ORTHO05D010364 3.4e-119 433.3 728 44.5
FAN05G0526 Fragaria x ananassa HOM05D008222 ORTHO05D010364 4.5e-119 433.0 700 46.3
FAN05G0780 Fragaria x ananassa HOM05D008222 ORTHO05D010364 5.5e-117 426.0 700 45.7
Lj5g0010690 Lotus japonicus HOM05D008222 ORTHO05D010364 2.1e-116 424.1 705 45.8
FAN02G2041 Fragaria x ananassa HOM05D008222 ORTHO05D010364 1.8e-115 421.0 700 45.1
FvH4_6g19810 Fragaria vesca HOM05D008222 ORTHO05D010364 3.3e-114 416.8 697 44.5
FAN14G0765 Fragaria x ananassa HOM05D008222 ORTHO05D010364 2.8e-113 413.7 697 44.0
RcHm_v2.0_Chr3g0475181 Rosa chinensis HOM05D008222 ORTHO05D010364 6.2e-113 412.5 693 44.9
FAN09G4126 Fragaria x ananassa HOM05D008222 ORTHO05D010364 8.1e-113 412.1 700 44.9
Lj1C1035T2 Lonicera japonica HOM05D008222 ORTHO05D010364 7.6e-111 405.6 702 43.0
TPR.G8743 Trifolium pratense HOM05D008222 ORTHO05D010364 2.2e-110 404.1 711 41.1
Phvul.007G270200 Phaseolus vulgaris HOM05D008222 ORTHO05D010364 2.7e-108 397.1 697 43.2
CANSAT64G2035 Cannabis sativa HOM05D008222 ORTHO05D010364 5.1e-107 392.9 776 38.1
VMungo0720G0042 Vigna mungo HOM05D008222 ORTHO05D010364 2.6e-103 380.6 712 39.2
MBI17_g16777_MAGBIO Magnolia biondii HOM05D008222 ORTHO05D010364 7.2e-101 372.5 707 44.0
Oeu010753.1 Olea europaea HOM05D008222 ORTHO05D010364 2.5e-98 364.0 701 37.1
MD12G1033800 Malus domestica HOM05D008222 ORTHO05D010364 3.3e-98 363.6 596 41.4
Oeu060355.1 Olea europaea HOM05D008222 ORTHO05D010364 7.4e-98 362.5 710 36.5
Oeu010756.1 Olea europaea HOM05D008222 ORTHO05D010364 1.4e-93 348.2 701 36.2
DCAR_020725 Daucus carota HOM05D008222 ORTHO05D010364 1.1e-90 338.6 710 37.2
Medtr1g058110 Medicago truncatula HOM05D008222 ORTHO05D010364 1.7e-86 324.7 701 40.7
MSTRG.10386 Avicennia marina HOM05D008222 ORTHO05D010364 1.3e-81 308.5 701 35.2
AUR62006264 Chenopodium quinoa HOM05D008222 ORTHO05D010364 1.7e-73 281.6 713 33.0
Aqoxy4G02694 Aquilegia oxysepala HOM05D008222 ORTHO05D010364 7.7e-71 272.7 713 36.2
Sc20g0006580 Simmondsia chinensis HOM05D008222 ORTHO05D010364 1.5e-69 268.5 689 36.7
AUR62028514 Chenopodium quinoa HOM05D008222 ORTHO05D010364 7.2e-69 266.2 820 33.4
Hund03869 Selenicereus undatus HOM05D008222 ORTHO05D010364 1.2e-68 265.4 786 30.7
EL10Ac7g16820 Beta vulgaris HOM05D008222 ORTHO05D010364 3.6e-68 263.8 808 32.9
Oeu010754.1 Olea europaea HOM05D008222 ORTHO05D010364 2.8e-57 227.6 534 34.6
HPP92_009786 Vanilla planifolia HOM05D008222 ORTHO05D010364 1.9e-53 214.9 701 33.2
SGA_v2.0_scaffold184G40000 Striga asiatica HOM05D008222 ORTHO05D010364 1.2e-52 212.2 701 31.0
ATR0772G019 Amborella trichopoda HOM05D008222 ORTHO05D010364 9.2e-48 196.1 741 31.0
SEGI_05246 Sequoiadendron giganteum HOM05D008222 ORTHO05D010364 2.8e-44 184.5 764 31.0
CDE06G1815 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 2.7e-39 167.9 684 29.7
CDE08G0440 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 1.3e-38 165.6 688 31.1
ECA233G4923 Erigeron canadensis HOM05D008222 ORTHO05D010364 9.5e-37 159.5 760 30.8
Os02g0536400 Oryza sativa ssp. japonica HOM05D008222 ORTHO05D010364 4.9e-33 147.1 718 30.1
unitig_8.g3557 Utricularia gibba HOM05D008222 ORTHO05D010364 2.1e-31 141.7 235 36.2
Lalb_Chr02g0154681 Lupinus albus HOM05D008222 ORTHO05D010364 1.1e-29 136.0 176 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1895 Anthoceros agrestis HOM05D008222 ORTHO05D010364 5.6e-13 80.5 54 66.7
Psat6g082000 Pisum sativum HOM05D008222 ORTHO05D010364 1.4e-11 75.9 123 41.5
Oeu017707.1 Olea europaea HOM05D008222 ORTHO05D010364 2.0e-10 72.0 229 33.2
A03p20610 Brassica napus HOM05D002912 ORTHO05D003191 7.1e-08 63.5 87 41.4
C03p24210 Brassica napus HOM05D002912 ORTHO05D003191 7.1e-08 63.5 87 41.4
BolC3t14815H Brassica oleracea HOM05D002912 ORTHO05D003191 7.1e-08 63.5 87 41.4
BraA03t11303Z Brassica rapa HOM05D002912 ORTHO05D003191 7.1e-08 63.5 87 41.4
Thhalv10017989m.g Eutrema salsugineum HOM05D002912 ORTHO05D003191 7.1e-08 63.5 87 41.4
Sp4g19660 Schrenkiella parvula HOM05D002912 ORTHO05D003191 7.1e-08 63.5 87 41.4
Carub.0004s1925 Capsella rubella HOM05D002912 ORTHO05D003191 9.3e-08 63.2 87 41.4
Os03g0285900 Oryza sativa ssp. japonica HOM05D002912 ORTHO05D003191 1.2e-07 62.8 85 41.2
C05p58480 Brassica napus HOM05D002912 ORTHO05D003191 1.6e-07 62.4 113 32.7
CARHR132250 Cardamine hirsuta HOM05D002912 ORTHO05D003191 1.6e-07 62.4 90 40.0
Os05g0120100 Oryza sativa ssp. japonica HOM05D002912 ORTHO05D003191 2.7e-07 61.6 73 42.5
Aa31LG5G22680 Aethionema arabicum HOM05D002912 ORTHO05D003191 3.5e-07 61.2 87 40.2
BolC5t34499H Brassica oleracea HOM05D002912 ORTHO05D003191 4.6e-07 60.8 79 36.7
Migut.L01640 Erythranthe guttata HOM05D002912 ORTHO05D003191 6.0e-07 60.5 73 41.1
A05p39460 Brassica napus HOM05D002912 ORTHO05D003191 7.9e-07 60.1 90 35.6
BraA05t22727Z Brassica rapa HOM05D002912 ORTHO05D003191 7.9e-07 60.1 90 35.6
Oeu029116.1 Olea europaea HOM05D002912 ORTHO05D003191 7.9e-07 60.1 72 41.7
Sc20g0002330 Simmondsia chinensis HOM05D002912 ORTHO05D003191 1.0e-06 59.7 73 42.5
ECA248G3238 Erigeron canadensis HOM05D002912 ORTHO05D003191 1.3e-06 59.3 73 41.1
Gorai.012G091800 Gossypium raimondii HOM05D002912 ORTHO05D003191 1.3e-06 59.3 73 41.1
Actinidia19735 Actinidia chinensis HOM05D002912 ORTHO05D003191 1.8e-06 58.9 77 37.7
AL4G33720 Arabidopsis lyrata HOM05D002912 ORTHO05D003191 1.8e-06 58.9 96 37.5
DCAR_017750 Daucus carota HOM05D002912 ORTHO05D003191 1.8e-06 58.9 72 40.3
Migut.J00390 Erythranthe guttata HOM05D002912 ORTHO05D003191 1.8e-06 58.9 85 37.6
THA.LOC104806511 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 1.8e-06 58.9 85 40.0
CARHR163400 Cardamine hirsuta HOM05D002912 ORTHO05D003191 2.3e-06 58.5 91 39.6
COL.COLO4_05801 Corchorus olitorius HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 42.5
Duzib106G1529 Durio zibethinus HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 42.5
C06p21470 Brassica napus HOM05D002912 ORTHO05D003191 3.0e-06 58.2 76 42.1
BolC6t37329H Brassica oleracea HOM05D002912 ORTHO05D003191 3.0e-06 58.2 76 42.1
BraA07t29849Z Brassica rapa HOM05D002912 ORTHO05D003191 3.0e-06 58.2 76 42.1
Rhsim03G0125000 Rhododendron simsii HOM05D002912 ORTHO05D003191 3.0e-06 58.2 85 38.8
THA.LOC104823247 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 3.0e-06 58.2 87 37.9
Ah.10g033180 Amaranthus hybridus HOM05D002912 ORTHO05D003191 3.9e-06 57.8 73 39.7
MSTRG.19116 Avicennia marina HOM05D002912 ORTHO05D003191 3.9e-06 57.8 73 39.7
Nitab4.5_0000914g0130 Nicotiana tabacum HOM05D002912 ORTHO05D003191 3.9e-06 57.8 108 36.1
THA.LOC104826998 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 3.9e-06 57.8 87 39.1
TWI53G0760 Tripterygium wilfordii HOM05D002912 ORTHO05D003191 3.9e-06 57.8 78 38.5
AL5G34420 Arabidopsis lyrata HOM05D002912 ORTHO05D003191 5.1e-06 57.4 76 42.1
AT3G53500 Arabidopsis thaliana HOM05D002912 ORTHO05D003191 5.1e-06 57.4 76 42.1
MSTRG.5705 Avicennia marina HOM05D002912 ORTHO05D003191 5.1e-06 57.4 73 39.7
A09p46490 Brassica napus HOM05D002912 ORTHO05D003191 5.1e-06 57.4 76 42.1
C08p28840 Brassica napus HOM05D002912 ORTHO05D003191 5.1e-06 57.4 76 42.1
BolC8t50486H Brassica oleracea HOM05D002912 ORTHO05D003191 5.1e-06 57.4 76 42.1
BraA09t40114Z Brassica rapa HOM05D002912 ORTHO05D003191 5.1e-06 57.4 76 42.1
Carub.0005s2007 Capsella rubella HOM05D002912 ORTHO05D003191 5.1e-06 57.4 76 42.1
FvH4_7g20711 Fragaria vesca HOM05D002912 ORTHO05D003191 5.1e-06 57.4 73 41.1
Gohir.D13G021300 Gossypium hirsutum HOM05D002912 ORTHO05D003191 5.1e-06 57.4 85 38.8
Gorai.002G252500 Gossypium raimondii HOM05D002912 ORTHO05D003191 5.1e-06 57.4 78 37.2
Gorai.013G024100 Gossypium raimondii HOM05D002912 ORTHO05D003191 5.1e-06 57.4 85 38.8
HanXRQChr08g0219481 Helianthus annuus HOM05D002912 ORTHO05D003191 5.1e-06 57.4 73 39.7
Lsat_1_v5_gn_1_54761 Lactuca sativa HOM05D002912 ORTHO05D003191 5.1e-06 57.4 72 37.5
Oeu025612.1 Olea europaea HOM05D002912 ORTHO05D003191 5.1e-06 57.4 73 41.1
Oeu037763.2 Olea europaea HOM05D002912 ORTHO05D003191 5.1e-06 57.4 73 41.1
RcHm_v2.0_Chr1g0364971 Rosa chinensis HOM05D002912 ORTHO05D003191 5.1e-06 57.4 73 41.1
Sabra06G0166100 Salix brachista HOM05D002912 ORTHO05D003191 5.1e-06 57.4 78 35.9
Sp5g08840 Schrenkiella parvula HOM05D002912 ORTHO05D003191 5.1e-06 57.4 76 42.1
CiPaw.01G279300 Carya illinoinensis HOM05D002912 ORTHO05D003191 6.7e-06 57.0 73 41.1
Gohir.A01G218600 Gossypium hirsutum HOM05D002912 ORTHO05D003191 6.7e-06 57.0 78 37.2
Lj1g0023882 Lotus japonicus HOM05D002912 ORTHO05D003191 6.7e-06 57.0 91 37.4
Potri.016G081700 Populus trichocarpa HOM05D002912 ORTHO05D003191 6.7e-06 57.0 78 35.9
Prupe.2G224200 Prunus persica HOM05D002912 ORTHO05D003191 6.7e-06 57.0 73 41.1
Sabra16G0089500 Salix brachista HOM05D002912 ORTHO05D003191 6.7e-06 57.0 78 35.9
TPR.G36918 Trifolium pratense HOM05D002912 ORTHO05D003191 6.7e-06 57.0 84 38.1
Cc06_g03240 Coffea canephora HOM05D002912 ORTHO05D003191 8.7e-06 56.6 73 38.4
Duzib114G0437 Durio zibethinus HOM05D002912 ORTHO05D003191 8.7e-06 56.6 73 39.7
Gohir.A10G208800 Gossypium hirsutum HOM05D002912 ORTHO05D003191 8.7e-06 56.6 73 39.7
Gohir.D10G217100 Gossypium hirsutum HOM05D002912 ORTHO05D003191 8.7e-06 56.6 73 39.7
Gorai.011G242700 Gossypium raimondii HOM05D002912 ORTHO05D003191 8.7e-06 56.6 73 39.7
Potri.006G215200 Populus trichocarpa HOM05D002912 ORTHO05D003191 8.7e-06 56.6 78 35.9
Thecc.10G063400 Theobroma cacao HOM05D002912 ORTHO05D003191 8.7e-06 56.6 117 35.0
Zm00001eb265810 Zea mays HOM05D002912 ORTHO05D003191 8.7e-06 56.6 85 36.5


User provided reference genes

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