Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 9.6e-239 829.7 403 100.0
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 2.4e-229 798.5 404 96.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.7e-190 669.5 405 81.5
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 4.1e-189 664.8 347 91.6
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.0e-184 650.2 408 79.4
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.8e-184 649.4 404 79.0
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 7.4e-183 644.0 405 79.5
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 6.3e-182 641.0 410 79.0
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.8e-181 639.4 408 79.2
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.8e-181 639.4 346 87.3
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.4e-181 639.0 350 86.0
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.4e-181 639.0 350 86.3
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 3.1e-181 638.6 412 77.4
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 3.1e-181 638.6 395 78.2
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.2e-180 636.7 346 86.7
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.2e-180 636.7 404 77.5
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.0e-180 636.0 351 86.0
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 4.5e-180 634.8 403 77.4
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.9e-180 634.4 405 77.3
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 5.9e-180 634.4 394 80.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 7.7e-180 634.0 403 77.9
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 7.7e-180 634.0 404 77.0
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.0e-179 633.6 403 78.2
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.9e-179 632.1 414 75.6
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 3.8e-179 631.7 403 77.2
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.8e-179 631.7 350 85.4
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 5.0e-179 631.3 419 75.9
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.1e-178 630.2 350 84.9
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.5e-178 629.8 350 85.1
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.5e-178 629.8 355 83.7
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.5e-178 629.8 405 77.0
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 2.5e-178 629.0 350 85.1
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 3.2e-178 628.6 398 78.9
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 3.2e-178 628.6 363 84.3
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 5.5e-178 627.9 392 78.1
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 9.4e-178 627.1 350 84.6
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.6e-177 626.3 350 84.0
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.6e-177 626.3 350 84.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.6e-177 626.3 392 77.3
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 2.1e-177 625.9 345 84.3
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 2.1e-177 625.9 398 78.6
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 2.7e-177 625.5 407 76.9
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.7e-177 625.5 339 87.0
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.6e-177 625.2 348 85.3
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 4.7e-177 624.8 351 84.6
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.0e-176 623.6 350 84.3
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.4e-176 623.2 403 77.2
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 1.8e-176 622.9 385 78.2
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.8e-176 622.9 339 87.0
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.8e-176 622.9 403 77.7
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.3e-176 622.5 403 77.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.3e-176 622.5 395 75.9
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 3.0e-176 622.1 392 78.3
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.0e-176 622.1 354 83.6
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 3.0e-176 622.1 403 77.2
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.0e-176 622.1 403 76.9
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 6.7e-176 620.9 341 87.1
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 6.7e-176 620.9 403 76.7
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 6.7e-176 620.9 346 85.0
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 8.8e-176 620.5 404 77.7
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 8.8e-176 620.5 344 86.0
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.2e-175 620.2 392 78.1
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.5e-175 619.8 354 83.3
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 3.3e-175 618.6 348 83.6
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.4e-175 618.2 403 76.4
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 4.4e-175 618.2 349 83.4
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 7.5e-175 617.5 406 75.4
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.3e-174 616.7 405 75.1
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.8e-174 615.5 412 76.0
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 2.8e-174 615.5 343 84.5
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 4.8e-174 614.8 400 76.0
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 6.3e-174 614.4 341 85.6
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 6.3e-174 614.4 349 83.1
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 8.2e-174 614.0 402 76.1
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.1e-173 613.6 414 74.2
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.1e-173 613.6 417 74.8
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.4e-173 613.2 402 75.9
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 2.4e-173 612.5 371 79.5
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 4.1e-173 611.7 352 81.5
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 7.0e-173 610.9 400 75.2
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 7.0e-173 610.9 401 75.8
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 9.1e-173 610.5 404 75.5
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.2e-172 610.1 401 75.6
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.2e-172 610.1 403 73.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 2.7e-172 609.0 402 74.9
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 3.5e-172 608.6 375 78.4
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 3.5e-172 608.6 347 80.7
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.0e-171 607.1 343 84.8
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.3e-171 606.7 397 74.6
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 8.5e-171 604.0 385 78.7
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.1e-170 603.6 456 68.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 3.2e-170 602.1 347 82.7
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 2.7e-169 599.0 358 81.0
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 2.7e-169 599.0 425 71.3
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 6.8e-168 594.3 407 73.0
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.5e-167 593.2 308 90.3
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 6.3e-166 587.8 322 86.0
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 8.3e-166 587.4 340 81.2
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 9.1e-165 583.9 352 79.8
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-164 583.6 394 73.1
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.7e-164 582.4 391 73.4
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 3.5e-164 582.0 356 78.1
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.2e-163 579.3 301 88.7
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.9e-162 576.2 386 76.2
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.6e-161 573.2 391 73.4
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 3.6e-161 572.0 331 82.8
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 8.0e-161 570.9 372 76.1
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-159 567.0 331 82.2
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.3e-158 563.5 397 70.8
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.1e-157 560.5 410 71.2
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.2e-156 557.0 391 71.6
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.0e-155 553.9 387 72.6
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 2.3e-155 552.7 498 59.0
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.1e-154 550.4 411 69.1
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.5e-151 540.0 550 53.8
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 7.5e-151 537.7 342 73.7
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 8.3e-150 534.3 557 54.0
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.5e-148 528.9 346 72.0
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.1e-146 523.9 349 71.1
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.3e-146 522.3 303 78.9
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 6.2e-145 518.1 407 63.4
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 9.2e-133 477.6 243 88.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 8.6e-131 471.1 323 71.2
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.2e-127 460.7 342 65.2
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 9.9e-127 457.6 402 62.4
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.0e-123 447.6 346 61.6
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 8.1e-121 438.0 307 65.8
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.9e-111 404.4 312 67.9
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.5e-106 389.8 253 75.9
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 8.4e-102 374.8 212 82.1
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.4e-101 374.0 340 54.7
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.9e-101 373.6 261 71.6
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.9e-100 368.2 349 54.2
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.7e-92 343.2 284 64.8
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.7e-89 332.8 207 75.8
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 6.9e-88 328.6 291 52.9
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 9.3e-85 318.2 249 66.7
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.6e-66 256.9 335 41.2
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 2.6e-66 256.9 127 92.9
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 4.4e-66 256.1 310 43.2
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.8e-65 253.4 335 40.0
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.4e-64 251.1 351 40.5
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 9.1e-64 248.4 380 37.4
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 4.4e-58 229.6 320 39.1
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.5e-55 219.5 334 38.6
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.0e-54 216.1 179 64.2
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.2e-50 204.9 247 40.9
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.5e-47 193.0 114 83.3
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 3.0e-43 180.3 155 61.9
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 4.0e-27 126.7 92 70.7
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.2e-25 120.9 56 92.9
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.1e-21 108.6 156 44.2
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 5.2e-19 99.8 78 65.4
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.2e-18 98.6 60 83.3
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 3.7e-17 93.6 180 41.1
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.4e-16 90.9 93 59.1
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 3.2e-16 90.5 49 81.6
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 4.7e-12 76.6 33 90.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 1.1e-08 65.5 34 73.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 4.1e-08 63.5 31 87.1


User provided reference genes

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