Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.5e-83 312.8 155 100.0
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 4.9e-82 307.8 155 98.1
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 5.9e-80 300.8 155 96.1
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 3.6e-77 291.6 154 91.6
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 3.1e-76 288.5 155 88.4
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 5.2e-76 287.7 155 89.7
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 3.4e-75 285.0 155 89.0
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 4.4e-75 284.6 155 85.2
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.7e-74 282.7 155 88.4
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.9e-74 282.0 155 86.5
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 6.4e-74 280.8 155 87.1
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.4e-73 277.7 155 83.2
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-72 276.6 155 81.9
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 1.6e-72 276.2 155 83.9
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.0e-72 275.8 155 86.5
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 2.0e-72 275.8 155 84.5
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 3.5e-72 275.0 155 83.2
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.6e-72 274.6 155 81.3
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.6e-72 274.6 155 86.5
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 6.0e-72 274.2 155 81.9
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 1.0e-71 273.5 155 81.9
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.0e-71 273.5 155 83.2
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 1.3e-71 273.1 155 81.3
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.3e-71 272.3 155 85.8
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 80.6
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 83.2
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.5e-70 269.6 155 83.2
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.9e-70 269.2 155 81.9
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.3e-70 268.5 155 82.6
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 81.9
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 2.1e-69 265.8 155 80.6
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 3.6e-69 265.0 155 81.9
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 4.7e-69 264.6 155 81.3
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 1.4e-68 263.1 155 81.9
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 81.9
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.1e-68 261.9 156 82.1
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.1e-68 261.9 156 82.1
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 3.1e-68 261.9 155 83.2
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 80.0
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 79.4
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 80.6
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.2e-67 260.0 155 78.7
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 2.0e-67 259.2 155 79.4
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.6e-67 258.8 155 78.7
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 3.7e-66 255.0 155 74.8
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 4.9e-66 254.6 155 75.5
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 6.4e-66 254.2 155 80.6
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.9e-65 252.7 155 78.7
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 76.8
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 78.1
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 78.1
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 77.4
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 7.0e-65 250.8 155 78.7
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 78.1
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 74.8
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 75.5
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 76.8
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 77.4
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 77.4
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.7e-64 248.8 155 78.1
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 76.8
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 78.1
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 6.0e-64 247.7 174 70.1
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.8e-64 247.3 155 76.8
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 76.8
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 75.5
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 74.2
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.0e-63 245.4 145 80.7
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 75.5
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 6.6e-63 244.2 155 76.8
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.1e-62 243.4 155 74.8
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 76.1
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 75.5
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 71.0
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 74.2
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.2e-61 240.0 152 77.0
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 2.8e-61 238.8 152 73.0
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 72.3
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 75.5
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 72.9
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 1.4e-60 236.5 153 73.9
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.8e-60 236.1 152 75.7
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 75.5
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 2.3e-60 235.7 147 79.6
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 71.6
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 72.3
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 5.2e-60 234.6 136 84.6
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 8.9e-60 233.8 154 71.4
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.5e-59 233.0 150 77.3
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 2.0e-59 232.6 214 57.9
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 3.4e-59 231.9 147 76.2
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 72.3
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 7.5e-59 230.7 145 74.5
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 9.9e-59 230.3 156 71.2
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.9e-58 228.8 150 76.7
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 4.9e-58 228.0 151 70.9
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 8.3e-58 227.3 156 70.5
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 8.3e-58 227.3 156 69.9
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.9e-57 226.1 146 74.0
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 4.1e-57 224.9 144 73.6
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.7e-56 222.2 156 68.6
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 4.6e-56 221.5 155 72.9
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 7.8e-56 220.7 156 68.6
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 7.8e-56 220.7 152 72.4
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 3.3e-54 215.3 133 77.4
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.3e-54 215.3 127 79.5
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 4.3e-54 214.9 153 65.4
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 4.7e-53 211.5 155 65.2
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 4.0e-52 208.4 188 56.4
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 5.8e-51 204.5 156 62.2
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.7e-50 203.0 152 61.2
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 9.2e-49 197.2 153 59.5
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 4.6e-48 194.9 154 58.4
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 6.0e-48 194.5 154 57.8
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 7.8e-48 194.1 154 58.4
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.0e-47 193.7 154 58.4
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.3e-47 193.4 128 68.8
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.3e-47 192.6 149 61.7
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 5.1e-47 191.4 163 59.5
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 3.6e-45 185.3 153 60.1
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.4e-44 183.3 114 78.1
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.8e-44 183.0 146 63.0
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 3.2e-41 172.2 103 79.6
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 7.1e-41 171.0 99 83.8
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.6e-40 169.9 91 90.1
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 2.3e-39 166.0 109 68.8
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 3.0e-39 165.6 109 69.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.5e-38 162.5 104 75.0
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.3e-37 160.2 83 92.8
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 6.2e-37 157.9 144 51.4
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 2.2e-34 149.4 109 68.8
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 2.7e-32 142.5 147 51.7
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 2.8e-29 132.5 148 43.9
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.1e-28 130.6 152 50.7
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 5.3e-28 128.3 128 51.6
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.2e-21 104.8 61 80.3
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.2e-21 104.8 61 80.3
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 4.0e-20 102.1 143 39.2
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 9.0e-20 100.9 130 42.3
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.0e-18 97.4 68 69.1
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 6.5e-18 94.7 68 67.6
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.1e-17 94.0 50 86.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 3.3e-14 82.4 129 34.9
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 5.5e-09 65.1 117 29.1


User provided reference genes

Program Settings