Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 3.0e-110 402.1 242 100.0
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 3.6e-108 395.2 242 98.3
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.2e-100 370.2 242 93.0
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 3.2e-96 355.5 240 88.3
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.2e-95 353.6 242 87.2
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.0e-94 350.5 242 86.4
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.0e-94 350.5 242 86.4
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 3.0e-94 349.0 242 83.5
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.9e-94 348.6 242 86.4
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.5e-93 346.7 242 85.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.5e-93 346.7 242 86.4
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 2.5e-93 345.9 242 82.2
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.3e-93 345.1 242 82.6
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 7.3e-93 344.4 242 86.0
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.6e-93 344.0 242 85.1
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.2e-92 343.6 242 76.4
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 2.1e-92 342.8 242 84.3
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.6e-92 342.0 242 83.9
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 8.1e-92 340.9 241 82.6
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 8.1e-92 340.9 241 81.7
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.1e-91 340.5 242 85.5
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 3.1e-91 339.0 243 79.0
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 3.1e-91 339.0 241 83.8
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 6.8e-91 337.8 241 83.4
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 8.9e-91 337.4 242 80.6
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 2.0e-90 336.3 242 81.4
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.6e-90 335.9 242 81.0
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.6e-90 335.9 241 74.3
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 3.4e-90 335.5 243 74.9
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 4.4e-90 335.1 241 82.6
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 4.4e-90 335.1 241 82.6
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.4e-90 335.1 243 78.2
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 4.4e-90 335.1 242 75.6
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 5.8e-90 334.7 241 83.0
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.8e-90 334.7 243 74.1
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 9.9e-90 334.0 241 81.7
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 1.7e-89 333.2 241 82.2
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 75.2
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.9e-89 332.4 236 83.9
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.9e-89 332.4 237 75.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 2.9e-89 332.4 241 81.3
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 4.9e-89 331.6 243 81.9
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 6.4e-89 331.3 242 74.8
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 8.4e-89 330.9 242 83.1
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.4e-88 330.1 228 88.2
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.9e-88 329.7 243 77.0
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.4e-88 329.3 206 82.0
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.4e-88 329.3 240 74.2
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 76.4
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 3.2e-88 328.9 243 77.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 4.2e-88 328.6 241 80.9
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 9.3e-88 327.4 243 81.5
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 9.3e-88 327.4 243 76.1
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.2e-87 327.0 242 75.6
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 2.7e-87 325.9 241 81.3
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 3.5e-87 325.5 241 82.6
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 4.6e-87 325.1 238 81.9
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 6.0e-87 324.7 242 73.1
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 7.8e-87 324.3 228 82.5
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 79.8
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.7e-86 323.2 243 76.1
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.3e-86 322.8 242 79.3
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 5.1e-86 321.6 242 71.9
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 6.6e-86 321.2 233 80.7
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 8.7e-86 320.9 242 70.7
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 8.7e-86 320.9 199 84.4
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 8.7e-86 320.9 241 80.5
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.1e-85 320.5 246 69.5
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.9e-85 319.7 242 79.3
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.9e-85 319.7 199 83.9
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.5e-85 319.3 242 79.3
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.3e-85 318.9 206 79.1
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 9.6e-85 317.4 245 70.6
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.6e-84 315.5 243 71.6
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 3.6e-84 315.5 241 69.7
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 4.8e-84 315.1 243 71.2
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 4.8e-84 315.1 210 81.0
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.8e-84 315.1 243 73.7
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 6.2e-84 314.7 209 80.9
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 6.2e-84 314.7 243 77.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.1e-84 314.3 243 70.8
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.1e-83 313.9 201 81.6
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.4e-83 313.5 243 73.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.8e-83 313.2 243 70.8
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.8e-83 313.2 242 73.6
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.0e-83 312.0 206 77.7
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.9e-83 311.2 205 78.5
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.5e-82 310.1 243 70.4
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.4e-82 308.9 207 77.3
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.4e-82 308.5 194 82.5
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 4.4e-82 308.5 205 78.5
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 5.8e-82 308.1 245 76.3
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 7.6e-82 307.8 241 75.1
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.3e-81 307.0 240 68.3
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 4.9e-81 305.1 229 78.6
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.1e-79 299.7 241 66.0
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 6.0e-79 298.1 244 75.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.0e-78 297.4 210 85.2
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.0e-78 297.4 243 73.7
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.7e-78 296.6 241 66.8
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.9e-77 293.1 207 76.3
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.3e-77 292.4 205 72.7
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 3.3e-77 292.4 207 75.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 4.3e-77 292.0 241 75.5
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.1e-76 289.7 227 73.6
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.6e-76 288.9 208 73.6
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 3.6e-76 288.9 208 74.5
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 4.8e-76 288.5 243 71.6
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 6.2e-76 288.1 208 73.1
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.1e-75 287.3 208 74.5
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.4e-75 286.2 243 64.2
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 6.9e-75 284.6 244 68.4
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 9.0e-75 284.3 208 72.6
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.0e-74 283.1 243 72.0
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 3.4e-74 282.3 183 79.8
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 5.8e-74 281.6 208 72.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.3e-73 280.4 208 70.7
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.3e-73 280.4 208 70.7
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 6.4e-73 278.1 208 70.2
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 6.4e-73 278.1 208 70.2
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 9.6e-69 264.2 203 67.0
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 4.8e-68 261.9 178 75.3
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 3.1e-67 259.2 192 70.3
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.2e-66 257.3 227 60.8
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.8e-59 233.4 206 66.5
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 5.3e-59 231.9 192 63.5
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 3.4e-58 229.2 157 75.8
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.6e-55 220.3 187 63.6
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 4.6e-55 218.8 205 59.0
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.3e-49 200.7 170 68.8
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.6e-47 193.7 133 75.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.7e-44 182.6 111 80.2
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 7.7e-42 174.9 206 54.9
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 5.7e-37 158.7 176 50.0
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.2e-34 151.0 173 49.1
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 2.0e-34 150.2 105 71.4
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.2e-28 130.2 185 42.2
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 4.1e-27 125.9 86 72.1
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.0e-26 123.6 92 69.6
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 2.7e-18 96.7 181 33.1
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.0e-17 92.4 90 72.2
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 3.6e-15 86.3 54 75.9
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.8e-14 84.0 53 81.1
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 3.1e-11 73.2 182 31.9


User provided reference genes

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