Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 2.2e-149 532.3 276 100.0
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.3e-132 474.6 276 90.6
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 4.8e-125 451.4 270 88.5
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 3.1e-124 448.7 269 87.4
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 2.8e-120 435.6 276 82.6
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.6e-118 429.1 277 82.7
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.6e-118 429.1 277 82.7
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 5.7e-118 427.9 279 82.1
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.3e-117 426.8 277 82.3
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.8e-116 422.9 278 82.7
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 5.4e-116 421.4 277 81.6
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 1.6e-115 419.9 280 80.4
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 2.0e-115 419.5 278 82.0
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 3.5e-115 418.7 277 80.5
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 7.8e-115 417.5 278 80.6
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 7.8e-115 417.5 284 79.9
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 7.8e-115 417.5 277 80.9
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 7.8e-115 417.5 278 82.4
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.8e-114 415.2 277 80.5
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 3.8e-114 415.2 277 80.1
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 8.6e-114 414.1 279 79.2
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.5e-113 413.3 276 82.6
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.9e-113 412.9 277 80.1
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 2.5e-113 412.5 277 80.1
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 3.3e-113 412.1 274 82.1
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 4.3e-113 411.8 279 80.3
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 9.5e-113 410.6 276 78.3
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 9.5e-113 410.6 279 79.6
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.2e-112 410.2 275 77.5
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.6e-112 409.8 278 80.6
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.6e-112 409.8 274 81.8
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.6e-112 409.8 281 79.0
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 2.8e-112 409.1 276 81.5
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 2.8e-112 409.1 276 81.5
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 4.7e-112 408.3 282 79.8
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 6.1e-112 407.9 278 79.5
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 1.8e-111 406.4 279 81.0
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 5.2e-111 404.8 275 78.5
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.2e-110 403.7 279 77.8
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.5e-110 403.3 274 79.9
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.0e-110 402.9 274 79.6
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 2.6e-110 402.5 280 77.5
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 2.6e-110 402.5 278 79.9
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.8e-110 401.4 279 77.8
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.5e-110 401.0 279 77.8
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 1.3e-109 400.2 275 75.6
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 3.7e-109 398.7 275 78.2
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 4.9e-109 398.3 274 77.7
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 6.4e-109 397.9 276 77.2
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 3.2e-108 395.6 279 78.1
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 5.4e-108 394.8 276 76.8
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.2e-108 394.0 279 77.1
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 2.7e-107 392.5 278 78.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 3.5e-107 392.1 276 78.3
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 3.5e-107 392.1 273 79.1
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 3.5e-107 392.1 273 79.1
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 6.0e-107 391.3 277 76.2
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 7.8e-107 391.0 277 78.0
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.0e-106 390.6 285 75.1
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.3e-106 390.2 279 76.7
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.3e-106 390.2 279 77.4
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.7e-106 389.8 279 76.7
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 2.3e-106 389.4 277 78.7
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.3e-106 389.4 285 75.1
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 3.0e-106 389.0 247 84.2
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.0e-106 388.3 279 77.4
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 5.0e-106 388.3 278 76.6
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 6.6e-106 387.9 281 74.4
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 6.6e-106 387.9 277 76.5
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 8.6e-106 387.5 275 77.1
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 2.5e-105 386.0 275 77.1
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 3.3e-105 385.6 276 75.4
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 3.3e-105 385.6 285 74.4
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 4.3e-105 385.2 275 73.1
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 5.6e-105 384.8 277 75.1
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.6e-104 383.3 272 75.7
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 1.6e-104 383.3 279 76.3
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.6e-104 383.3 278 75.5
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.8e-104 382.5 284 73.9
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 3.6e-104 382.1 272 76.8
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 4.7e-104 381.7 278 74.8
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 8.0e-104 380.9 272 75.7
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.1e-103 380.6 283 74.2
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.8e-103 379.8 272 75.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.8e-103 379.8 272 75.4
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.8e-103 379.8 279 77.8
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 2.3e-103 379.4 272 75.4
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 2.3e-103 379.4 272 75.4
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-103 379.4 272 75.4
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-103 379.4 272 75.4
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 2.3e-103 379.4 272 75.4
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 2.3e-103 379.4 272 75.4
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 3.1e-103 379.0 274 74.8
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 4.0e-103 378.6 272 76.8
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 4.0e-103 378.6 272 75.7
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 4.0e-103 378.6 272 75.4
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 4.0e-103 378.6 274 75.5
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 5.2e-103 378.3 272 75.7
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 8.9e-103 377.5 277 75.1
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.2e-102 377.1 272 75.0
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.2e-102 377.1 272 75.0
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.7e-101 373.2 275 74.5
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 2.2e-101 372.9 278 73.7
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 1.4e-100 370.2 277 73.6
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 7.0e-100 367.9 268 75.0
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 2.0e-99 366.3 277 73.3
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 6.0e-99 364.8 284 71.5
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 7.8e-99 364.4 283 72.1
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 3.9e-98 362.1 242 79.8
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 8.6e-98 360.9 278 71.2
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.3e-97 359.0 199 88.9
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 4.3e-97 358.6 227 81.9
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.1e-96 356.3 279 71.0
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 3.6e-96 355.5 284 70.1
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 3.6e-96 355.5 215 84.2
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.1e-95 354.0 274 70.8
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.1e-89 334.0 194 84.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 4.7e-88 328.6 216 76.9
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.4e-84 317.0 199 79.4
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.6e-83 313.5 282 61.3
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 2.8e-80 302.8 213 71.4
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.1e-79 299.3 248 70.2
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 6.9e-79 298.1 170 86.5
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 2.0e-78 296.6 195 80.5
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 8.1e-72 274.6 163 88.3
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 4.0e-71 272.3 197 79.7
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 7.1e-68 261.5 201 72.6
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 5.6e-65 251.9 134 94.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 2.7e-59 233.0 161 69.6
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.1e-57 227.6 275 52.0
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 5.3e-55 218.8 165 66.7
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 9.0e-47 191.4 234 53.4
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.2e-45 186.8 155 72.3
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 7.2e-44 181.8 123 74.0
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.3e-40 171.0 96 85.4
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.2e-36 155.2 182 48.9
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.2e-36 155.2 182 48.9
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 4.7e-27 125.9 113 65.5
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.0e-22 110.5 81 76.5
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.0e-10 71.6 141 34.0
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 2.3e-10 70.5 183 29.5
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 4.8e-08 62.8 36 83.3
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.1e-07 61.6 48 70.8
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 1.2e-06 58.2 60 46.7


User provided reference genes

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