Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 2219.9 1145 100.0
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 2013.4 1161 91.3
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1823.9 1151 83.4
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1816.2 1150 82.9
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1648.3 1151 76.1
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1629.0 1151 74.9
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1623.2 1150 75.5
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1613.6 1147 75.4
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1607.8 1169 74.0
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1600.5 1172 72.6
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1600.5 1153 74.7
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1600.1 1145 73.6
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1598.2 1148 73.7
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1596.6 1150 72.9
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1596.6 1145 73.2
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1591.6 1148 73.6
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1590.9 1153 73.8
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1590.1 1172 72.2
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1589.7 1146 74.0
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1589.3 1157 73.7
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1585.9 1152 74.0
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1584.3 1182 72.0
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1581.2 1146 72.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1578.5 1187 71.5
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1578.5 1157 73.5
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1565.8 1187 71.3
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1562.0 1171 72.3
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1554.3 1154 71.1
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1553.5 1146 71.7
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1547.7 1157 72.4
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1545.8 1157 72.4
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1544.6 1158 71.8
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1543.1 1151 70.5
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1542.7 1156 72.7
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1540.0 1158 70.6
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1535.8 1153 72.1
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1533.1 1156 72.2
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1527.7 1146 70.9
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1527.7 1149 72.4
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1525.8 1152 72.0
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1518.4 1145 70.8
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1517.3 1161 70.7
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1513.0 1149 71.4
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1513.0 1149 71.4
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1511.5 1152 71.4
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1511.1 1160 69.7
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1501.9 1178 70.4
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1469.1 1151 68.7
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1466.8 1156 68.5
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1466.1 1153 68.2
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1464.1 1153 68.1
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1460.7 1150 69.0
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1459.5 1153 68.2
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1456.4 1150 68.7
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1453.0 1143 68.1
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1448.7 1170 66.9
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1440.6 1150 68.2
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1436.4 1150 68.2
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1434.5 1150 67.7
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1429.1 1151 67.6
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1429.1 1150 67.1
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1427.5 1153 67.0
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1425.6 1153 68.0
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1423.3 1152 67.7
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1417.9 1173 66.4
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1416.7 1173 65.8
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1415.6 1175 66.6
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1412.1 1173 66.2
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1410.2 1173 66.0
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1409.0 1174 65.9
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1408.7 1173 66.1
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1406.3 1160 66.0
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1404.8 1148 66.8
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1404.8 1177 65.8
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1397.5 1110 67.5
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1396.7 1153 66.8
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1389.8 1159 65.2
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1383.6 1215 64.0
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1378.6 1156 65.7
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1377.8 1148 65.9
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1377.1 1152 65.4
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1376.3 1154 65.1
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1375.9 1157 65.4
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1351.3 1147 65.6
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1313.1 1186 61.6
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1312.0 1214 60.3
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1307.4 886 77.3
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1270.8 934 73.1
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1180.6 914 70.1
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1150.2 1033 61.8
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1096.3 1236 51.4
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1080.1 1217 51.4
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 1.7e-309 1066.2 1222 50.9
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.5e-309 1064.3 743 74.3
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.0e-285 985.7 1160 50.4
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.9e-274 947.6 740 68.5
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 3.4e-257 892.5 1403 41.3
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 6.2e-243 845.1 589 75.9
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 6.7e-237 825.1 590 73.7
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.9e-224 783.1 545 75.0
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.4e-223 780.8 538 75.8
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.7e-216 757.3 620 66.1
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 1.1e-215 754.6 537 73.9
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 6.8e-205 718.8 622 64.0
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.2e-190 671.4 612 62.1
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.4e-178 631.3 571 61.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.7e-176 624.4 1180 37.2
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 6.0e-169 599.4 566 60.1
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.1e-165 588.6 546 61.4
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.3e-143 513.8 465 63.9
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.1e-138 498.8 547 53.6
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 2.1e-137 494.6 389 66.3
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 7.9e-129 466.1 309 78.0
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.7e-128 462.6 329 73.9
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.9e-116 423.3 375 63.2
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 7.7e-116 422.9 778 36.1
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 7.4e-111 406.4 486 51.9
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 7.4e-111 406.4 379 62.0
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.4e-109 401.4 539 47.3
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 2.3e-96 358.2 1199 28.9
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 7.7e-92 343.2 225 79.1
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.7e-89 334.0 358 48.9
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.6e-81 308.9 261 57.5
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 8.8e-80 303.1 444 46.8
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 5.9e-76 290.4 249 63.5
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 5.9e-76 290.4 218 72.0
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.2e-71 276.2 238 65.1
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.7e-67 262.3 179 74.3
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 3.6e-65 254.6 149 88.6
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 8.9e-64 250.0 147 85.0
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.6e-63 248.4 374 44.9
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 9.2e-61 240.0 370 44.6
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 3.0e-59 235.0 374 43.6
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 1.1e-58 233.0 374 43.6
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.9e-54 217.6 200 59.0
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.6e-51 207.2 106 98.1
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 8.1e-49 200.3 113 89.4
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-47 196.1 111 89.2
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 4.4e-47 194.5 113 87.6
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 8.4e-46 190.3 113 85.8
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 8.4e-46 190.3 113 85.8
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 1.1e-42 179.9 109 85.3
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.5e-42 179.5 183 59.0
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.6e-42 177.6 586 30.2
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 7.3e-42 177.2 106 86.8
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 4.4e-39 167.9 97 85.6
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 7.6e-39 167.2 99 85.9
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.9e-38 165.2 268 44.8
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 2.3e-35 155.6 82 95.1
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.3e-27 129.8 120 55.8
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 7.4e-26 124.0 167 48.5
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.3e-25 123.2 151 45.0
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 9.0e-24 117.1 71 83.1
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 4.5e-23 114.8 73 79.5
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 9.9e-23 113.6 75 78.7
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 2.9e-22 112.1 75 77.3
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 2.1e-20 105.9 71 74.6
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.0e-19 103.6 91 63.7
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 1.3e-06 60.1 55 60.0


User provided reference genes

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