Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 0.0e+00 1702.2 832 100.0
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 0.0e+00 1496.5 832 87.7
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 0.0e+00 1473.0 833 86.2
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 0.0e+00 1400.6 819 83.0
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1395.6 817 82.7
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 0.0e+00 1387.5 832 81.5
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1381.7 817 82.1
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 0.0e+00 1376.3 832 80.4
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1374.4 817 81.6
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 0.0e+00 1374.0 818 82.0
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1371.7 832 80.8
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 0.0e+00 1369.8 817 80.9
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 0.0e+00 1369.0 833 79.7
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 0.0e+00 1363.6 854 78.7
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1360.9 832 79.4
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1357.4 826 79.7
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 0.0e+00 1354.3 832 78.8
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 0.0e+00 1354.3 832 79.9
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 0.0e+00 1351.7 832 78.1
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 0.0e+00 1351.3 833 78.4
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 0.0e+00 1349.7 832 79.0
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1348.2 834 78.7
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1345.5 856 77.1
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 0.0e+00 1344.7 833 77.7
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 0.0e+00 1339.7 832 77.8
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 0.0e+00 1337.4 833 77.4
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1335.1 832 78.5
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1330.9 833 78.0
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1329.3 833 78.0
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1328.9 833 77.6
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1327.4 833 76.8
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 0.0e+00 1325.8 822 79.2
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 0.0e+00 1324.7 839 76.8
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1323.1 833 77.7
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 0.0e+00 1319.3 835 77.6
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 0.0e+00 1318.1 832 77.3
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1317.8 833 76.4
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 0.0e+00 1317.4 848 80.8
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1314.3 833 76.4
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1307.4 832 75.5
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 0.0e+00 1307.4 829 75.5
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 0.0e+00 1306.6 832 76.1
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1306.6 832 75.8
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1304.7 832 75.8
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1303.5 832 76.4
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 0.0e+00 1302.7 837 76.8
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1302.7 832 76.0
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 0.0e+00 1302.3 832 75.8
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 0.0e+00 1301.6 832 75.4
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 0.0e+00 1300.8 834 75.8
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1299.3 832 75.2
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1298.9 833 75.6
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 0.0e+00 1295.4 832 75.5
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 0.0e+00 1292.7 830 75.2
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 0.0e+00 1292.3 834 75.9
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 0.0e+00 1291.2 830 75.1
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 0.0e+00 1290.8 832 75.0
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1290.4 790 79.4
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 0.0e+00 1290.0 830 75.2
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 0.0e+00 1287.3 832 76.1
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 0.0e+00 1286.6 830 74.8
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1284.2 833 75.2
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 0.0e+00 1280.0 832 75.6
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 0.0e+00 1275.4 830 74.5
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 0.0e+00 1273.8 838 73.9
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 0.0e+00 1272.3 829 74.9
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1271.9 829 74.8
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1270.4 829 74.7
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1270.0 836 74.8
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1269.6 834 74.9
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 0.0e+00 1267.7 829 74.5
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 0.0e+00 1266.5 832 75.0
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1265.0 838 74.6
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 0.0e+00 1265.0 830 73.7
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 0.0e+00 1263.8 830 73.0
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 0.0e+00 1263.8 832 73.6
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1260.0 837 74.0
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1258.8 836 72.5
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 0.0e+00 1257.7 831 73.5
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 0.0e+00 1256.9 832 74.5
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 0.0e+00 1253.4 815 75.2
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 0.0e+00 1250.3 776 78.9
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 0.0e+00 1250.0 817 73.7
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 0.0e+00 1241.1 868 71.1
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 0.0e+00 1238.0 834 71.9
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 0.0e+00 1216.4 833 71.9
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 0.0e+00 1209.1 837 70.3
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 0.0e+00 1208.7 837 70.7
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 0.0e+00 1205.3 840 72.0
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1196.8 835 70.3
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1189.1 835 69.9
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 0.0e+00 1182.2 844 69.1
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 0.0e+00 1178.3 721 77.7
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 0.0e+00 1164.1 803 71.9
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 0.0e+00 1154.0 836 68.9
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 0.0e+00 1114.0 856 65.9
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 7.3e-310 1067.0 830 63.4
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 2.0e-307 1058.9 837 63.7
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 5.8e-307 1057.4 825 66.5
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 2.1e-301 1038.9 833 61.6
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 8.7e-287 990.3 826 58.8
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 3.6e-264 915.2 836 56.6
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 1.3e-253 880.2 592 70.3
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 6.3e-253 877.9 717 60.3
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 1.8e-252 876.3 929 52.2
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 2.0e-246 856.3 617 67.6
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 9.2e-236 820.8 578 68.0
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 1.0e-231 807.4 573 68.1
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 7.3e-217 758.1 487 76.2
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 2.1e-216 756.5 460 81.1
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 8.1e-216 754.6 959 45.4
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 2.4e-212 743.0 494 74.9
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 1.6e-211 740.3 491 73.1
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 1.5e-177 627.5 811 43.6
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 4.8e-176 622.5 382 78.5
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 6.7e-154 548.9 628 50.6
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 1.8e-143 514.2 432 60.6
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 4.0e-130 469.9 425 61.6
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 1.5e-129 468.0 428 57.5
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 5.2e-122 443.0 302 69.9
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 4.4e-105 386.7 411 49.4
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 6.0e-102 376.3 223 85.2
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 4.3e-100 370.2 233 80.7
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 6.8e-98 362.8 425 46.1
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 6.0e-86 323.2 190 84.7
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.3e-77 295.4 322 53.1
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 2.8e-75 287.7 170 85.9
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 6.9e-66 256.5 250 53.2
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 2.2e-64 251.5 190 65.8
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 2.5e-60 238.0 157 79.0
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 6.1e-54 216.9 372 37.1
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 1.8e-50 205.3 123 78.9
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.6e-46 192.2 133 75.9
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 1.3e-40 172.6 138 68.8
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 2.2e-40 171.8 150 63.3
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 2.3e-37 161.8 114 71.1
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 2.1e-30 138.7 179 42.5
SEGI_32872 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 1.8e-29 135.6 89 76.4
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 6.7e-29 133.7 171 45.6
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 1.3e-27 129.4 93 69.9
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 1.7e-27 129.0 93 69.9
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 4.5e-25 120.9 97 56.7
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 5.0e-24 117.5 287 32.1
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 1.1e-23 116.3 75 77.3
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus HOM05D004869 ORTHO05D005893 2.5e-23 115.2 73 83.6
AagrBONN_evm.TU.Sc2ySwM_117.3343 Anthoceros agrestis HOM05D001528 ORTHO05D006464 8.0e-22 110.2 415 28.0
Haze_26447 Corylus avellana HOM05D001528 ORTHO05D006464 2.3e-21 108.6 300 28.7
BolC1t05585H Brassica oleracea HOM05D004869 ORTHO05D005893 3.0e-21 108.2 65 87.7
PGSC0003DMG400027831 Solanum tuberosum HOM05D004869 ORTHO05D005893 3.0e-21 108.2 59 89.8
TPR.G25902 Trifolium pratense HOM05D000002 ORTHO05D000001 3.0e-21 108.2 73 65.8
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 9.8e-20 103.2 69 72.5
PRCOL_00006365 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.8e-18 99.0 331 27.8
Pp3c3_14940 Physcomitrium patens HOM05D001528 ORTHO05D006464 1.6e-17 95.9 279 29.0
FAN25G2184 Fragaria x ananassa HOM05D001528 ORTHO05D006464 3.5e-17 94.7 335 26.3
BcaC09g47921 Brassica carinata HOM05D004869 ORTHO05D005893 7.7e-17 93.6 57 86.0
CAN.G65.194 Capsicum annuum HOM05D001528 ORTHO05D006464 1.0e-16 93.2 317 27.8
Mapoly0154s0036 Marchantia polymorpha HOM05D001528 ORTHO05D006464 2.2e-16 92.0 282 29.8
CAN.G631.6 Capsicum annuum HOM05D001528 ORTHO05D006464 3.8e-16 91.3 319 25.7
Cre06.g296400 Chlamydomonas reinhardtii HOM05D001528 ORTHO05D006464 3.8e-16 91.3 321 26.8
Cfa026122 Carpinus fangiana HOM05D001528 ORTHO05D006464 6.5e-16 90.5 287 27.5
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 8.5e-16 90.1 197 34.5
PRCOL_00001565 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.9e-15 89.0 285 28.1
MCO09G491 Micromonas commoda HOM05D001528 ORTHO05D022264 1.8e-13 82.4 343 24.5
Medtr0837s0010 Medicago truncatula HOM05D001528 ORTHO05D006464 1.2e-12 79.7 265 26.8
PRCOL_00002017 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.7e-11 75.9 344 25.9
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 4.9e-11 74.3 53 64.2
PRCOL_00005382 Prasinoderma coloniale HOM05D001528 ORTHO05D022264 4.5e-09 67.8 280 25.4
Cfa027299 Carpinus fangiana HOM05D001528 ORTHO05D006464 7.7e-09 67.0 296 23.6
Cfa025513 Carpinus fangiana HOM05D001528 ORTHO05D022264 6.6e-08 63.9 298 21.8
MCO16G633 Micromonas commoda HOM05D001528 ORTHO05D006464 1.9e-07 62.4 289 23.5


User provided reference genes

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