Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 2531.5 1340 100.0
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 2464.1 1341 97.5
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 2067.7 1356 81.8
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 2027.3 1359 80.7
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1853.2 1355 74.1
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1835.1 1359 73.4
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1830.8 1358 72.8
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1822.8 1352 73.3
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1801.2 1356 71.5
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1785.8 1352 71.3
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1785.0 1357 71.8
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1781.9 1352 71.2
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1780.4 1356 70.4
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1748.8 1357 70.4
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1726.5 1357 69.7
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1721.1 1360 69.3
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1719.1 1352 69.7
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1711.8 1355 69.7
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1705.6 1384 68.5
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1703.3 1350 68.4
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1702.6 1362 68.3
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1695.2 1347 67.8
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1691.4 1364 67.2
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1687.5 1360 68.0
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1687.2 1349 68.7
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1687.2 1348 68.1
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1681.4 1394 67.1
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1680.6 1357 67.1
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1676.4 1356 67.0
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1671.4 1356 67.0
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1656.7 1349 66.6
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1644.0 1342 67.3
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1641.7 1358 66.1
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1640.9 1355 66.4
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1639.4 1352 65.8
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1638.2 1354 66.1
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1637.9 1350 65.8
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1627.1 1361 65.5
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1623.6 1352 64.9
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1623.2 1355 65.7
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1598.2 1360 63.4
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1597.8 1372 65.1
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1597.4 1350 66.1
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1594.3 1361 64.1
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1593.2 1341 65.4
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1592.8 1357 64.0
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1588.5 1064 79.9
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1584.7 1398 63.3
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1562.0 1351 65.0
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1560.0 1193 69.4
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1553.9 1355 62.9
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1550.0 1348 63.0
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1548.1 1299 66.6
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1543.1 1368 62.5
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1541.6 1366 62.2
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1536.2 1356 63.0
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1533.9 1368 62.4
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1532.3 1357 62.3
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1530.0 1354 62.0
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1527.7 1366 61.7
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1526.5 1281 65.1
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1515.0 1355 62.3
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1511.5 1393 60.7
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1504.2 1385 61.7
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1498.8 1323 62.6
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1495.7 1335 62.0
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1493.8 1352 61.8
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1492.2 1325 62.4
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1489.6 1360 61.1
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1488.4 1360 61.5
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1487.6 1330 62.1
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1486.5 1359 61.6
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1484.5 1352 61.3
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1483.4 1320 62.1
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1479.9 1320 62.3
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1476.1 1327 62.2
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1475.7 1324 62.1
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1475.3 1324 61.8
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1473.4 1330 62.1
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1472.6 1320 61.8
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1472.2 1210 65.4
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1468.8 1352 60.6
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1460.7 1330 61.4
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1431.0 1350 59.3
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1430.6 1292 62.4
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1425.2 1241 63.1
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1407.9 1357 58.1
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1383.6 1322 59.4
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1374.8 1060 68.2
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1364.0 1354 59.5
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1362.8 1362 56.5
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1350.9 1412 56.2
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1314.7 1205 60.7
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1306.2 1216 60.2
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 0.0e+00 1300.4 982 71.0
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1268.8 1376 52.7
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1242.3 1050 64.3
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1231.5 1360 54.1
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 0.0e+00 1134.0 944 64.5
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 0.0e+00 1127.1 1200 53.7
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 0.0e+00 1124.4 1342 50.4
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 0.0e+00 1077.8 1350 49.1
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 1.4e-310 1070.1 1353 50.0
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.2e-309 1067.0 952 60.7
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.2e-283 978.0 776 66.6
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 7.2e-283 978.0 1032 53.7
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 2.3e-276 956.4 761 67.8
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 8.0e-274 948.0 1172 49.9
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 2.4e-262 909.8 837 61.3
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.1e-254 884.4 715 65.2
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.7e-250 869.0 837 57.5
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 8.1e-250 868.2 1064 51.5
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 2.1e-245 853.6 1354 42.1
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 3.2e-230 803.1 1120 45.4
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 3.0e-220 770.0 1449 37.9
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 5.1e-196 689.5 503 74.2
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 5.9e-184 649.4 1111 38.6
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.7e-176 622.5 457 73.7
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 6.5e-175 619.4 619 56.1
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 8.0e-157 559.3 1477 30.8
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 1.5e-155 555.1 404 73.8
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.4e-147 527.3 412 72.3
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 5.2e-132 476.9 341 78.9
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 9.6e-110 402.9 329 67.2
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.7e-104 384.8 329 61.1
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 1.7e-98 365.5 274 77.7
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 1.1e-92 346.3 433 48.7
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.3e-90 339.3 364 56.3
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 3.8e-82 311.2 1426 25.7
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.4e-79 302.8 599 41.2
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 2.4e-68 265.4 1292 26.1
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 5.4e-52 211.1 222 55.0
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 1.8e-47 196.1 156 65.4
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 2.0e-38 166.0 106 80.2
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 5.7e-38 164.5 114 71.1
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 8.6e-34 150.6 235 39.1
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 8.9e-31 140.6 82 84.1
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 3.7e-29 135.2 87 77.0
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 8.3e-29 134.0 188 47.9
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 4.1e-28 131.7 114 64.0
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 3.6e-24 118.6 115 54.8
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.2e-16 93.6 81 60.5
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.2e-16 93.6 81 60.5
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 8.9e-15 87.4 69 60.9
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 5.8e-14 84.7 88 59.1
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 4.9e-13 81.6 89 50.6
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 2.7e-11 75.9 52 75.0
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 3.6e-08 65.5 59 59.3
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 3.4e-06 58.9 161 26.7
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 5.8e-06 58.2 134 27.6
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 5.8e-06 58.2 152 27.6
BraA03t14040Z Brassica rapa HOM05D002639 ORTHO05D003094 9.9e-06 57.4 48 62.5


User provided reference genes

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