Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 2.0e-112 409.1 197 100.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 2.2e-55 219.5 142 77.5
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.5e-51 206.8 138 74.6
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 3.3e-51 205.7 109 86.2
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 3.3e-51 205.7 109 86.2
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 3.3e-51 205.7 145 72.4
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 5.6e-51 204.9 144 72.9
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 9.6e-51 204.1 109 87.2
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.3e-50 203.8 109 86.2
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 3.7e-50 202.2 109 85.3
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 3.7e-50 202.2 138 71.7
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 8.1e-50 201.1 117 79.5
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.1e-49 200.7 108 85.2
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.4e-49 200.3 141 68.1
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 2.4e-49 199.5 109 83.5
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 3.1e-49 199.1 141 67.4
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 3.1e-49 199.1 138 73.2
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.2e-48 197.2 109 83.5
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.2e-48 197.2 138 68.1
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.5e-48 196.8 109 89.0
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 2.6e-48 196.1 115 82.6
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 3.4e-48 195.7 145 71.0
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 4.5e-48 195.3 109 84.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 4.5e-48 195.3 109 86.2
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 4.5e-48 195.3 142 73.2
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 5.8e-48 194.9 142 72.5
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 5.8e-48 194.9 109 85.3
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 5.8e-48 194.9 107 82.2
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 7.6e-48 194.5 108 82.4
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.0e-47 194.1 109 81.7
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.0e-47 194.1 145 71.0
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.0e-47 194.1 138 68.8
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.3e-47 193.7 109 80.7
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.7e-47 193.4 144 69.4
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.2e-47 193.0 110 82.7
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.9e-47 192.6 117 77.8
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 2.9e-47 192.6 109 81.7
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 4.9e-47 191.8 109 80.7
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 8.4e-47 191.0 109 81.7
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.1e-46 190.7 134 67.2
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.4e-46 190.3 109 81.7
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.4e-46 190.3 109 81.7
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.9e-46 189.9 146 69.9
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.2e-46 189.1 109 80.7
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 3.2e-46 189.1 108 80.6
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 3.2e-46 189.1 109 79.8
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 4.2e-46 188.7 109 78.9
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 4.2e-46 188.7 109 79.8
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 4.2e-46 188.7 106 82.1
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 4.2e-46 188.7 109 78.9
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 5.5e-46 188.3 109 79.8
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 5.5e-46 188.3 106 81.1
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 7.1e-46 188.0 107 80.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 9.3e-46 187.6 109 78.9
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 9.3e-46 187.6 109 79.8
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 9.3e-46 187.6 146 69.2
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.2e-45 187.2 109 81.7
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 1.2e-45 187.2 110 81.8
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.2e-45 187.2 107 81.3
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.6e-45 186.8 109 78.9
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 1.6e-45 186.8 109 80.7
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 2.1e-45 186.4 109 78.0
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.1e-45 186.4 109 78.9
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 2.7e-45 186.0 109 78.9
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 2.7e-45 186.0 107 79.4
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 2.7e-45 186.0 109 79.8
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 4.6e-45 185.3 109 79.8
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.0e-44 184.1 110 80.0
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 5.1e-44 181.8 109 78.9
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 5.1e-44 181.8 109 74.3
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 8.7e-44 181.0 109 73.4
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.1e-43 180.6 123 70.7
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.5e-43 180.3 109 77.1
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.9e-43 179.9 109 73.4
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 4.3e-43 178.7 110 76.4
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.6e-42 176.8 109 81.7
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 2.1e-42 176.4 109 74.3
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 3.7e-42 175.6 105 78.1
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.7e-42 175.6 109 80.7
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.7e-42 175.6 109 80.7
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.8e-42 175.3 109 81.7
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 6.2e-42 174.9 109 76.1
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 6.2e-42 174.9 109 75.2
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.8e-41 173.3 110 75.5
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.8e-41 173.3 107 74.8
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 2.4e-41 172.9 109 75.2
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 5.8e-40 168.3 109 69.7
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 7.6e-40 167.9 107 72.0
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 1.7e-39 166.8 102 81.4
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-38 163.7 110 70.9
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.9e-38 163.3 106 70.8
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-38 162.5 140 59.3
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-38 162.2 110 70.0
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-38 162.2 110 70.0
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 7.1e-38 161.4 107 67.3
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-37 160.2 110 69.1
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-36 157.5 110 69.1
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-36 157.1 113 65.5
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.3e-36 157.1 132 60.6
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 6.7e-36 154.8 109 65.1
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 5.7e-35 151.8 116 62.1
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 9.7e-35 151.0 109 64.2
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.1e-33 147.5 109 63.3
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 3.4e-32 142.5 111 59.5
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 2.9e-31 139.4 109 67.9
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.4e-30 137.1 109 59.6
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.9e-30 136.7 96 72.9
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 3.0e-28 129.4 63 88.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 3.0e-28 129.4 109 62.4
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-27 126.7 95 64.2
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.2e-24 117.5 97 54.6
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.5e-24 117.1 157 47.8
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.0e-24 116.7 57 89.5
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.4e-24 115.9 64 81.2
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.4e-24 115.9 64 81.2
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 4.5e-24 115.5 117 53.0
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.8e-20 103.6 109 46.8
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 2.3e-20 103.2 63 74.6
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 5.7e-19 98.6 47 97.9
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 9.1e-17 91.3 107 47.7
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-16 90.9 110 49.1
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 3.5e-16 89.4 135 36.3
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 6.5e-15 85.1 64 64.1
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-14 82.4 64 60.9
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 2.3e-12 76.6 49 71.4
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 3.7e-10 69.3 61 60.7


User provided reference genes

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