Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 0.0e+00 1118.6 1035 100.0
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 5.2e-297 1024.6 1019 90.7
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 3.5e-245 852.4 1028 80.9
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.7e-229 799.7 576 81.9
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 6.3e-226 788.5 571 82.7
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 3.4e-224 782.7 676 78.0
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.0e-220 769.6 569 80.8
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 9.1e-217 758.1 570 77.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 8.5e-215 751.5 678 70.5
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 6.7e-212 741.9 576 79.7
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 4.4e-211 739.2 573 78.2
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.4e-209 734.2 585 76.6
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.4e-209 733.4 587 76.7
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.7e-207 727.2 571 77.2
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 1.7e-207 727.2 579 80.7
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 3.2e-206 723.0 571 77.6
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 9.4e-206 721.5 592 78.2
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 2.1e-205 720.3 569 75.0
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 3.6e-205 719.5 569 78.7
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 8.0e-205 718.4 491 83.1
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 2.3e-204 716.8 491 83.3
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 3.0e-204 716.5 572 79.4
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 5.2e-204 715.7 567 74.8
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.2e-203 714.5 595 78.3
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.5e-203 714.1 592 77.5
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 3.3e-203 713.0 596 75.5
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 5.7e-203 712.2 569 78.4
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 8.2e-202 708.4 567 75.7
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.1e-201 708.0 563 77.6
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.1e-201 708.0 569 74.5
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.4e-201 706.8 570 73.5
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 2.4e-201 706.8 575 78.3
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.4e-201 706.8 566 77.9
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 4.1e-201 706.1 571 76.5
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.3e-201 705.7 588 75.2
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 7.0e-201 705.3 570 75.8
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.2e-200 704.5 568 74.1
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 2.0e-200 703.7 589 75.9
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.3e-199 701.0 580 76.4
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 2.1e-197 693.7 581 73.3
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.0e-196 691.4 573 77.8
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.0e-196 691.4 573 77.8
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.4e-196 691.0 613 74.9
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.8e-196 690.6 573 77.8
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.8e-196 690.6 573 77.3
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.2e-196 689.1 573 77.8
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 6.8e-196 688.7 553 76.5
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 2.0e-195 687.2 562 75.6
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.4e-195 686.4 613 74.6
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.4e-193 681.0 575 75.7
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.1e-193 679.9 607 73.1
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 3.1e-193 679.9 570 72.5
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 2.0e-192 677.2 570 74.0
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 5.9e-192 675.6 496 80.6
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.7e-191 674.1 579 74.3
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 8.6e-191 671.8 586 67.9
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 8.6e-191 671.8 596 73.3
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 8.0e-189 665.2 594 69.7
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 4.0e-188 662.9 588 73.0
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 8.9e-188 661.8 568 68.3
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 5.7e-187 659.1 558 74.2
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.1e-185 654.8 566 73.1
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 3.5e-184 649.8 569 69.2
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.3e-183 647.9 589 71.1
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.3e-183 647.9 617 64.7
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 1.5e-182 644.4 594 68.0
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 3.3e-182 643.3 571 68.7
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.2e-181 641.3 588 70.4
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 2.3e-180 637.1 509 76.4
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 5.2e-180 636.0 509 76.4
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 2.6e-179 633.6 508 71.9
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 3.4e-179 633.3 601 64.6
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 5.8e-179 632.5 570 71.6
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.3e-178 631.3 585 66.0
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.1e-177 628.2 579 70.1
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.4e-177 627.9 574 72.5
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.9e-177 627.5 575 69.4
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.2e-173 614.8 581 66.4
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 2.8e-173 613.6 579 67.2
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 3.6e-173 613.2 571 64.6
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 6.2e-173 612.5 572 71.0
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.8e-172 610.9 584 66.4
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 1.8e-172 610.9 573 69.1
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 3.1e-172 610.1 506 69.2
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 4.4e-171 606.3 506 69.0
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 4.4e-171 606.3 506 69.0
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 4.4e-171 606.3 506 69.0
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 5.8e-171 605.9 501 72.7
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.3e-170 604.7 506 68.8
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 6.4e-170 602.4 596 65.1
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 8.3e-170 602.1 595 61.7
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 2.4e-169 600.5 569 66.3
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 7.0e-169 599.0 501 72.3
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 2.3e-167 594.0 513 68.8
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 4.3e-166 589.7 597 68.0
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 4.7e-165 586.3 591 66.7
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 9.9e-163 578.6 584 69.9
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 2.9e-162 577.0 584 69.7
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 2.5e-158 563.9 492 74.4
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.4e-156 558.1 479 76.4
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 7.8e-152 542.3 499 65.1
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 3.1e-132 477.2 395 83.8
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 3.5e-120 437.2 580 55.9
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 2.0e-115 421.4 594 52.7
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 4.2e-113 413.7 510 56.1
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 9.4e-113 412.5 301 72.8
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.3e-109 402.1 299 70.2
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.6e-94 351.3 215 82.3
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 1.0e-90 339.3 514 50.2
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 6.1e-88 330.1 541 47.1
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 1.8e-79 302.0 517 48.5
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.7e-74 285.4 336 62.2
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 6.6e-74 283.5 517 47.0
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.5e-73 282.3 306 66.3
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.6e-72 278.9 514 46.3
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.8e-71 275.4 177 79.7
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.2e-69 268.5 250 71.2
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 5.9e-67 260.4 276 63.8
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 8.6e-66 256.5 297 50.8
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.7e-64 250.8 250 70.8
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.2e-62 246.1 179 74.3
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 4.7e-56 224.2 203 64.5
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 5.4e-28 131.0 141 60.3
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 9.9e-22 110.2 69 78.3
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 1.3e-21 109.8 88 60.2
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 1.1e-20 106.7 71 74.6
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 7.1e-20 104.0 85 62.4
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 2.8e-16 92.0 87 66.7
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 6.2e-16 90.9 99 54.5
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 8.1e-16 90.5 218 42.7
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 5.3e-15 87.8 94 56.4
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.2e-13 82.4 99 52.5
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 2.9e-13 82.0 428 26.4
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.1e-12 80.1 263 34.2
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 1.9e-12 79.3 436 28.2
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 2.1e-11 75.9 78 73.1
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 3.1e-07 62.0 89 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 6.9e-07 60.8 118 45.8
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 4.5e-06 58.2 103 36.9
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 4.5e-06 58.2 103 36.9
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 5.8e-06 57.8 111 35.1
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 5.8e-06 57.8 108 35.2
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 5.8e-06 57.8 108 35.2
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 7.6e-06 57.4 107 35.5
Cfa019452 Carpinus fangiana HOM05D001023 ORTHO05D000912 1.0e-05 57.0 111 36.0
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 1.0e-05 57.0 111 36.0
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.0e-05 57.0 112 33.0
TWI38G1104 Tripterygium wilfordii HOM05D001023 ORTHO05D000912 1.0e-05 57.0 108 35.2


User provided reference genes

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