Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 2.0e-175 620.2 326 100.0
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 8.2e-169 598.2 326 97.2
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 2.4e-128 463.8 332 77.4
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 5.7e-122 442.6 315 79.0
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 2.8e-116 423.7 330 71.8
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 4.9e-113 412.9 324 73.8
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 2.4e-112 410.6 327 69.4
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 4.1e-112 409.8 329 70.5
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 5.9e-111 406.0 346 68.2
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 8.6e-110 402.1 343 68.5
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 1.5e-109 401.4 331 68.6
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 2.5e-109 400.6 345 68.4
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 6.2e-108 396.0 329 68.7
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 8.0e-108 395.6 332 68.1
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 1.5e-106 391.3 326 68.4
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 1.5e-106 391.3 314 72.3
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 7.5e-106 389.0 337 66.5
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 7.5e-106 389.0 331 68.9
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 2.2e-105 387.5 334 67.4
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.9e-105 387.1 337 66.2
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 4.9e-105 386.3 334 66.5
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 8.3e-105 385.6 328 67.4
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 1.9e-104 384.4 324 67.6
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 4.1e-104 383.3 261 79.3
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 4.1e-104 383.3 261 79.3
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 4.1e-104 383.3 321 69.2
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 4.1e-104 383.3 331 65.9
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 3.0e-102 377.1 334 66.2
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 3.0e-102 377.1 334 65.0
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 6.6e-102 375.9 260 76.5
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 1.9e-101 374.4 332 67.5
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 1.9e-101 374.4 334 63.5
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 3.3e-101 373.6 316 68.7
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 3.3e-101 373.6 272 74.6
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 9.5e-101 372.1 327 66.4
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 9.5e-101 372.1 327 66.4
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 6.2e-100 369.4 340 64.1
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 1.8e-99 367.9 328 62.8
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 2.3e-99 367.5 262 74.4
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 4.0e-99 366.7 328 63.4
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 4.4e-98 363.2 334 61.1
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 5.8e-98 362.8 336 64.9
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.3e-97 361.7 334 62.0
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 1.3e-97 361.7 340 61.5
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 3.7e-97 360.1 324 63.9
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 6.4e-97 359.4 316 67.1
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 8.3e-97 359.0 324 63.0
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 8.3e-97 359.0 325 63.4
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 8.3e-97 359.0 339 61.9
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 1.1e-96 358.6 263 71.1
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 4.1e-96 356.7 329 61.4
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 9.2e-96 355.5 305 66.9
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 9.2e-96 355.5 263 70.3
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 7.8e-95 352.4 270 71.5
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 1.3e-94 351.7 325 61.8
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 2.3e-94 350.9 342 61.4
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 3.9e-94 350.1 318 61.9
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 6.6e-94 349.4 329 62.6
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 1.1e-93 348.6 317 65.0
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.5e-93 348.2 305 66.9
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 3.3e-93 347.1 313 64.5
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 4.3e-93 346.7 279 69.5
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 7.3e-93 345.9 330 59.4
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 7.3e-93 345.9 324 63.9
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 3.6e-92 343.6 272 67.3
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 4.7e-92 343.2 312 63.8
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 4.7e-92 343.2 317 62.5
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 8.1e-92 342.4 312 61.9
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 1.1e-91 342.0 326 62.3
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 6.8e-91 339.3 310 61.9
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 6.8e-91 339.3 310 61.9
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 6.8e-91 339.3 310 61.9
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 6.8e-91 339.3 316 61.7
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 1.7e-89 334.7 325 59.1
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 2.2e-89 334.3 314 62.4
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 3.8e-89 333.6 241 74.7
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 4.9e-89 333.2 328 57.3
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 2.4e-88 330.9 311 61.1
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 2.4e-88 330.9 311 61.1
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 4.1e-88 330.1 305 61.0
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 3.5e-87 327.0 256 70.7
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 1.0e-86 325.5 324 56.5
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 1.7e-86 324.7 256 69.5
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 2.3e-86 324.3 311 60.5
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 2.3e-86 324.3 312 62.2
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 6.6e-86 322.8 245 72.7
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 8.6e-86 322.4 245 72.7
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 7.3e-85 319.3 298 61.1
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 3.1e-83 313.9 249 67.9
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 2.0e-82 311.2 328 57.3
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 1.3e-81 308.5 256 66.4
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 6.4e-81 306.2 301 58.1
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 2.4e-80 304.3 309 56.0
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 2.1e-79 301.2 309 57.3
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 2.7e-79 300.8 330 55.5
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.3e-76 292.0 330 52.7
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.6e-76 291.6 327 54.4
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 1.1e-75 288.9 312 56.1
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 4.6e-71 273.5 174 80.5
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 2.2e-65 254.6 266 60.2
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 1.5e-58 231.9 167 70.7
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 2.9e-49 201.1 330 46.1
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.8e-43 181.8 216 44.9
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 4.1e-43 180.6 322 40.4
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 6.3e-36 156.8 183 47.0
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 2.3e-30 138.3 213 37.6
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 5.3e-27 127.1 260 36.9
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 3.2e-24 117.9 171 36.3
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 2.7e-23 114.8 257 37.0
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.4e-22 112.5 169 33.1
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 6.3e-20 103.6 78 69.2
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.1e-15 88.6 52 84.6
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.1e-15 88.6 52 84.6
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 3.0e-14 84.7 50 82.0
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.5e-13 82.4 60 73.3
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 2.0e-13 82.0 51 76.5
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 3.7e-12 77.8 49 75.5
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 6.5e-09 67.0 51 60.8
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 2.1e-07 62.0 251 22.7
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 1.4e-06 59.3 37 78.4
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 5.2e-06 57.4 47 57.4


User provided reference genes

Program Settings