Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 7.9e-213 743.4 352 100.0
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 3.4e-192 674.9 352 89.8
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 6.3e-186 654.1 352 86.4
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 4.2e-182 641.3 352 84.1
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 2.1e-181 639.0 352 85.2
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 2.0e-179 632.5 352 83.5
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 2.6e-179 632.1 352 83.0
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 3.3e-179 631.7 353 82.7
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 9.7e-179 630.2 351 83.2
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 1.3e-178 629.8 352 82.1
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.7e-178 628.2 352 83.0
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 6.3e-178 627.5 352 83.0
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.1e-177 626.7 352 82.7
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 1.4e-177 626.3 354 82.8
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.8e-177 625.9 352 82.4
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.1e-177 625.2 350 82.0
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 5.3e-177 624.4 352 81.2
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 5.3e-177 624.4 352 79.5
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.2e-176 623.2 352 81.2
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.2e-176 623.2 352 82.1
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 2.0e-176 622.5 350 80.9
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 3.5e-176 621.7 352 82.7
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 7.7e-176 620.5 350 81.1
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 1.3e-175 619.8 352 82.4
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 5.0e-175 617.8 352 82.1
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 8.5e-175 617.1 352 81.5
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 3.2e-174 615.1 339 84.4
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 4.2e-174 614.8 350 80.0
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 9.4e-174 613.6 352 81.0
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 2.7e-173 612.1 350 80.0
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 3.6e-173 611.7 361 79.8
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.4e-172 609.8 352 81.2
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 1.4e-172 609.8 350 80.0
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.8e-172 609.4 350 79.4
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.8e-172 609.4 350 79.4
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.8e-172 609.4 350 79.4
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 5.2e-172 607.8 351 80.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.5e-171 606.3 339 82.3
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.5e-171 606.3 352 80.1
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 2.6e-171 605.5 352 78.7
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 7.4e-171 604.0 352 79.5
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 9.7e-171 603.6 352 79.8
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 1.7e-170 602.8 352 79.8
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 3.7e-170 601.7 352 79.0
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.1e-169 600.1 355 77.7
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 9.1e-169 597.0 352 78.7
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 3.5e-168 595.1 355 79.2
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 2.2e-167 592.4 352 77.3
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 6.5e-167 590.9 358 77.7
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.9e-166 589.3 350 75.7
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 2.5e-166 589.0 352 77.6
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.2e-166 588.6 352 77.3
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 5.5e-166 587.8 352 76.4
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.7e-165 585.5 339 78.8
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 2.7e-165 585.5 352 77.6
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 6.1e-165 584.3 352 78.1
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 6.1e-165 584.3 374 74.3
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 8.0e-165 583.9 338 78.7
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 8.0e-165 583.9 352 76.1
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 8.0e-165 583.9 353 76.5
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.0e-164 583.6 352 76.1
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.4e-164 583.2 351 76.4
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 2.3e-164 582.4 319 84.0
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 8.8e-164 580.5 352 76.1
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.5e-163 579.7 352 75.6
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.5e-163 579.7 352 75.6
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.0e-163 579.3 352 76.1
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 2.0e-163 579.3 351 78.3
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 3.4e-163 578.6 352 75.9
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 3.4e-163 578.6 338 79.3
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.7e-162 576.2 352 76.4
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 2.8e-162 575.5 352 75.0
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 4.8e-162 574.7 340 79.1
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.6e-160 569.7 352 75.6
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.6e-160 569.7 352 75.6
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.5e-160 568.2 319 81.8
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 5.0e-159 564.7 352 73.6
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.5e-158 563.1 347 74.1
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 9.4e-158 560.5 352 74.4
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.6e-157 559.7 352 73.6
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 2.7e-157 558.9 352 73.6
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 6.1e-157 557.8 350 73.7
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 4.0e-156 555.1 352 73.3
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 2.6e-155 552.4 352 72.7
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 7.5e-155 550.8 352 73.0
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.3e-154 550.1 339 74.0
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.7e-154 549.7 319 80.3
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 1.1e-153 547.0 395 66.3
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 4.5e-152 541.6 352 69.3
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 7.7e-152 540.8 338 75.7
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.5e-150 536.6 352 73.0
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 4.2e-150 535.0 408 63.0
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 6.1e-149 531.2 295 82.7
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.8e-145 519.6 346 71.1
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 2.4e-145 519.2 294 80.6
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 5.4e-145 518.1 338 68.0
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 7.0e-145 517.7 293 80.5
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 7.0e-145 517.7 293 80.5
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.7e-143 513.1 319 74.9
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 3.4e-139 498.8 319 73.0
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 5.8e-139 498.0 353 63.5
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 3.2e-137 492.3 353 63.7
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 2.3e-135 486.1 263 85.9
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 9.5e-134 480.7 296 75.0
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 3.6e-133 478.8 303 73.9
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 5.2e-132 474.9 353 60.6
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 2.6e-131 472.6 269 79.9
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.7e-130 469.9 396 61.1
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 2.2e-130 469.5 323 69.3
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 3.0e-127 459.1 224 98.2
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 3.6e-125 452.2 255 80.4
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 7.3e-118 427.9 353 62.0
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.2e-97 359.0 201 82.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 2.9e-90 336.3 180 85.0
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.9e-90 336.3 203 75.9
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.9e-89 333.6 358 43.9
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 7.1e-89 331.6 232 65.5
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.2e-83 314.3 354 41.5
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.2e-81 306.2 211 69.2
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 5.9e-75 285.4 355 40.0
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.2e-74 283.5 158 79.1
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 6.5e-66 255.4 199 62.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.7e-58 230.7 144 73.6
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-54 218.0 126 82.5
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.2e-51 208.0 126 74.6
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 2.7e-51 206.8 364 31.6
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 8.3e-45 185.3 108 77.8
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.1e-44 184.9 129 69.0
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 8.5e-42 175.3 226 44.2
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 3.2e-41 173.3 87 93.1
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 4.3e-33 146.4 76 92.1
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 1.1e-28 131.7 310 26.8
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.1e-25 121.7 82 62.2
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 3.6e-24 116.7 72 69.4
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 8.0e-24 115.5 217 30.0
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.0e-22 110.9 69 72.5
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.8e-22 109.4 73 67.1
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 8.9e-15 85.5 51 74.5
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 2.0e-14 84.3 225 24.0
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 4.4e-14 83.2 357 23.5
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 5.8e-14 82.8 146 34.9
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 7.5e-14 82.4 85 45.9
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 9.8e-14 82.0 54 74.1
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 1.3e-13 81.6 219 23.3
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.9e-13 79.7 44 77.3
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 1.2e-11 75.1 214 22.9
Ah.01g008430 Amaranthus hybridus HOM05D000347 ORTHO05D001997 1.6e-11 74.7 218 24.8
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.3e-10 71.6 116 35.3
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 6.6e-10 69.3 169 34.9
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 6.6e-10 69.3 312 21.8
Lj9A393T56 Lonicera japonica HOM05D000347 ORTHO05D001997 1.1e-09 68.6 220 20.9
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.5e-09 68.2 217 23.0
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 1.9e-09 67.8 148 24.3
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 2.5e-09 67.4 149 23.5
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 2.5e-09 67.4 149 23.5
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 4.3e-09 66.6 48 62.5
Sopen01g053630 Solanum pennellii HOM05D000347 ORTHO05D001997 5.6e-09 66.2 147 25.9
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 1.2e-08 65.1 148 25.7
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 1.6e-08 64.7 148 22.3
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.6e-08 64.7 148 22.3
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 2.1e-08 64.3 157 24.2
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.1e-08 64.3 148 21.6
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.1e-08 64.3 148 21.6
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.6e-08 63.5 52 55.8
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 3.6e-08 63.5 41 63.4
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.7e-08 63.2 71 35.2
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 8.1e-08 62.4 148 22.3
CAN.G588.81 Capsicum annuum HOM05D000347 ORTHO05D001997 1.1e-07 62.0 151 23.2
Potri.018G068200 Populus trichocarpa HOM05D002302 ORTHO05D002728 1.4e-07 61.6 157 24.2
VMungo1127G1264 Vigna mungo HOM05D000347 ORTHO05D001997 1.4e-07 61.6 220 22.7
Gohir.A01G002500 Gossypium hirsutum HOM05D000347 ORTHO05D001997 3.1e-07 60.5 220 21.8
Gorai.002G002900 Gossypium raimondii HOM05D000347 ORTHO05D001997 3.1e-07 60.5 220 21.8
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 4.0e-07 60.1 235 21.7
BcaB05g22415 Brassica carinata HOM05D000347 ORTHO05D001997 6.8e-07 59.3 163 22.7
AUR62009045 Chenopodium quinoa HOM05D000347 ORTHO05D001997 8.9e-07 58.9 163 21.5
AUR62020617 Chenopodium quinoa HOM05D000347 ORTHO05D001997 8.9e-07 58.9 163 21.5
arahy.Tifrunner.gnm1.ann1.YQX6Q2 Arachis hypogaea HOM05D000347 ORTHO05D001997 1.2e-06 58.5 233 21.0
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.2e-06 58.5 32 71.9
Lj9A311G56 Lonicera japonica HOM05D000347 ORTHO05D001997 4.4e-06 56.6 189 22.2
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.4e-06 56.6 68 38.2
TAR381G0809 Trochodendron aralioides HOM05D000347 ORTHO05D001997 7.6e-06 55.8 213 22.1


User provided reference genes

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