Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 2200.2 1132 100.0
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1976.8 1192 87.9
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1733.4 1245 75.4
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1654.4 1072 79.9
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1532.7 1148 71.9
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1530.4 1153 70.3
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1523.5 1155 69.5
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1522.7 1155 69.5
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1520.8 1151 70.0
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1518.8 1125 72.3
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1508.0 1161 69.5
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1489.2 1203 67.0
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1488.8 1151 70.2
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1477.6 1205 65.6
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1458.0 1119 70.8
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1449.1 1121 68.7
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1435.2 1153 66.9
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1426.0 1142 66.0
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1421.4 1153 66.5
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1421.0 1135 68.5
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1420.6 1140 68.6
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1409.4 1151 66.2
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1402.5 1140 67.8
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1398.3 1154 65.2
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1397.5 1182 64.0
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1395.6 1229 62.2
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1389.8 952 74.8
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1388.6 1154 65.0
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1381.3 1151 65.2
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1380.9 1214 61.5
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1376.3 1150 65.0
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1374.8 1150 64.8
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1372.1 1158 63.6
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1370.1 1163 64.3
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1369.4 1009 71.1
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1367.4 1210 62.3
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1360.5 1190 63.4
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1359.7 1222 62.2
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1352.4 1188 62.6
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1352.0 1006 70.1
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1351.7 1134 66.2
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1342.8 871 78.5
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1341.3 1139 64.0
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1340.1 1084 66.7
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1335.9 1144 63.4
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1333.2 1116 64.1
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1332.0 1152 62.3
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1319.3 1232 59.6
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1318.5 912 72.7
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1315.1 1147 62.1
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1315.1 1342 56.3
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1313.9 1145 62.4
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1308.9 1209 61.9
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1305.0 1143 62.5
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1302.0 1091 64.5
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1300.0 1140 64.6
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1290.8 1220 58.9
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1286.2 1197 59.9
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1283.5 1109 62.2
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1280.0 1239 57.2
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1269.2 1275 57.6
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1265.0 912 72.0
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1261.1 920 69.5
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1257.3 873 75.5
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1249.2 1220 58.3
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1240.3 1186 56.9
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1221.5 1227 56.4
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1213.0 1189 57.4
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1210.3 1207 56.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1207.2 1198 56.8
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1204.9 1196 56.9
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1190.6 917 67.2
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1184.9 1216 55.8
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1167.9 817 73.6
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1167.9 833 73.9
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 0.0e+00 1160.2 932 67.7
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1155.2 1122 60.2
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 0.0e+00 1131.3 1121 55.1
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 0.0e+00 1131.3 986 63.1
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 0.0e+00 1105.9 807 69.3
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 0.0e+00 1103.2 1018 59.7
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 0.0e+00 1081.6 863 68.3
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.5e-311 1072.8 817 68.3
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 8.2e-304 1047.3 1026 56.2
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 5.5e-292 1008.1 781 70.9
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 2.0e-289 999.6 1145 51.4
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 2.0e-286 989.6 691 73.5
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 7.7e-286 987.6 689 73.3
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 4.1e-271 938.7 1121 49.6
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.5e-268 930.2 953 52.4
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.6e-265 919.5 1049 49.0
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 9.8e-265 917.5 970 51.8
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 3.6e-259 899.0 629 76.0
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 6.0e-246 855.1 594 73.6
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.0e-245 852.8 993 48.4
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 3.1e-242 842.8 613 70.3
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.3e-237 827.4 995 47.4
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.9e-231 807.0 1067 48.1
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.0e-229 799.7 717 63.2
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 2.1e-211 740.3 708 58.6
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 7.4e-196 688.7 503 67.4
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 6.3e-195 685.6 499 71.7
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-166 591.3 415 71.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.9e-159 567.8 738 46.3
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 4.2e-159 566.6 399 74.2
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.6e-158 564.7 752 44.3
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 9.2e-138 495.7 421 62.7
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.9e-130 471.5 369 69.6
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 2.5e-127 461.1 348 67.5
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.1e-118 431.4 369 65.3
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 9.0e-85 319.7 374 44.1
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.4e-77 295.8 293 59.4
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.9e-72 277.7 227 62.1
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.7e-70 271.2 527 36.6
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.1e-69 267.7 272 58.1
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.8e-67 261.2 207 65.7
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 2.7e-65 255.0 208 66.8
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 3.0e-64 251.5 704 30.5
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 3.3e-63 248.1 359 44.8
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 5.9e-60 237.3 263 48.7
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 9.4e-58 229.9 165 66.7
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.4e-56 226.1 188 63.8
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-55 222.6 165 70.3
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 1.5e-55 222.6 446 40.6
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.3e-54 217.2 255 47.5
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 2.0e-47 195.7 720 27.1
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.4e-47 194.5 151 64.9
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 4.8e-46 191.0 672 28.0
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.4e-45 189.5 859 25.3
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 1.2e-44 186.4 159 64.2
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.5e-44 184.9 770 26.2
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 1.0e-43 183.3 300 41.3
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.2e-43 182.2 936 25.3
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 3.6e-41 174.9 151 59.6
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.8e-40 172.6 780 25.0
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.8e-40 170.6 476 30.7
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 8.8e-40 170.2 123 65.9
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.6e-39 168.7 136 64.0
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.8e-37 162.5 126 64.3
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.7e-33 147.9 828 23.7
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.1e-33 147.5 157 51.0
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.0e-32 144.8 124 61.3
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 2.0e-31 142.5 813 24.4
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.0e-28 132.5 482 25.3
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.5e-28 131.7 745 23.1
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 7.8e-28 130.6 114 64.0
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-23 115.9 73 78.1
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 1.7e-22 112.8 127 51.2
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 1.7e-22 112.8 81 64.2
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 4.9e-22 111.3 297 29.0
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 2.4e-21 109.0 675 25.9
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 2.0e-20 105.9 105 49.5
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 1.3e-19 103.2 69 78.3
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 1.2e-17 96.7 254 33.9
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.2e-16 91.3 261 27.6
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 1.7e-14 86.3 232 37.1
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.9e-14 84.7 434 24.0
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.6e-12 79.7 116 39.7
Lsat_1_v5_gn_5_52420 Lactuca sativa HOM05D002705 ORTHO05D004955 2.7e-12 79.0 91 46.2
Lsat_1_v5_gn_9_1780 Lactuca sativa HOM05D002705 ORTHO05D004955 1.0e-11 77.0 72 56.9
Lsat_1_v5_gn_8_47661 Lactuca sativa HOM05D002705 ORTHO05D004955 1.3e-11 76.6 139 39.6
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 9.5e-10 70.5 101 42.6
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.8e-08 66.2 183 33.3
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 4.0e-08 65.1 42 73.8
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 1.3e-06 60.1 108 38.0
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.9e-06 58.9 69 40.6


User provided reference genes

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