Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.1e-162 576.6 292 100.0
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 9.9e-161 570.1 292 99.0
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 2.6e-145 518.8 292 89.0
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 5.8e-145 517.7 292 89.0
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.9e-144 515.4 292 88.0
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 8.4e-144 513.8 292 87.0
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.9e-143 512.7 292 87.0
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.9e-143 512.7 292 87.7
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 7.9e-142 507.3 292 87.3
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.3e-141 506.5 292 86.0
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 3.9e-141 505.0 293 87.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 1.9e-140 502.7 292 86.0
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.3e-140 501.9 290 87.2
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 6.2e-139 497.7 292 85.6
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 8.1e-139 497.3 290 85.5
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.1e-138 496.9 292 84.9
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.1e-138 496.9 294 86.4
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.8e-138 496.1 292 84.6
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 4.0e-138 495.0 292 83.2
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 2.6e-137 492.3 292 83.9
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 1.0e-136 490.3 292 83.6
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 2.2e-136 489.2 292 82.9
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.8e-136 488.4 290 85.5
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-135 486.9 294 84.4
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.4e-135 486.5 292 84.2
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 2.5e-135 485.7 292 83.6
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 5.5e-135 484.6 280 85.0
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.1e-134 482.6 292 82.2
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 2.7e-134 482.3 291 84.5
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.7e-134 482.3 323 77.4
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 7.9e-134 480.7 291 84.2
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.0e-133 480.3 292 82.5
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 2.3e-133 479.2 293 82.3
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 3.9e-133 478.4 290 80.3
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 8.7e-133 477.2 292 82.2
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 8.7e-133 477.2 321 77.3
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.5e-132 476.5 273 86.8
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.5e-132 476.5 290 81.7
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.9e-132 476.1 290 80.3
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 2.5e-132 475.7 290 80.3
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.3e-132 475.3 292 81.8
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 4.3e-132 474.9 306 79.4
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 5.7e-132 474.6 291 81.8
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.3e-131 473.4 291 80.8
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.6e-131 473.0 292 81.8
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 6.3e-131 471.1 326 75.2
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.8e-130 469.5 292 80.8
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.2e-129 466.8 294 79.9
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.2e-129 466.8 292 80.1
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.5e-129 466.5 292 79.1
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 2.6e-129 465.7 292 80.5
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 3.4e-129 465.3 293 80.2
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 8.4e-128 460.7 291 79.0
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.1e-127 460.3 237 97.5
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.4e-127 459.9 290 77.9
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 3.2e-127 458.8 292 79.8
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 7.2e-127 457.6 292 79.1
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 7.2e-127 457.6 292 79.1
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.2e-126 456.8 292 79.5
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 1.2e-126 456.8 293 79.5
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.8e-125 453.0 292 78.1
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.8e-125 453.0 292 77.1
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.8e-125 453.0 292 79.5
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 6.7e-125 451.1 292 76.4
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 8.7e-125 450.7 292 77.4
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 1.1e-124 450.3 297 76.4
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.5e-124 449.9 267 82.0
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.9e-124 449.5 292 78.4
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 7.4e-124 447.6 292 78.4
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.8e-123 445.7 290 76.9
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 3.7e-123 445.3 292 76.7
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 4.8e-123 444.9 292 76.7
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.1e-122 442.2 290 76.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 5.3e-122 441.4 325 72.3
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.5e-121 439.9 292 76.0
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.5e-121 439.9 290 76.2
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 3.4e-121 438.7 294 75.5
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.0e-120 437.2 291 75.9
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.9e-120 435.6 292 77.1
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-119 433.7 293 75.8
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.1e-119 433.7 293 76.5
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.4e-119 433.3 308 72.4
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 3.2e-119 432.2 297 75.8
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.5e-119 431.4 310 71.6
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.2e-118 430.3 293 75.8
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 2.7e-118 429.1 294 73.5
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 4.6e-118 428.3 292 75.3
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 4.6e-118 428.3 292 75.3
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 6.1e-118 427.9 385 62.9
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.8e-117 426.4 292 72.9
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 5.1e-117 424.9 292 76.7
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.3e-115 420.2 298 73.5
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.7e-115 418.7 292 74.0
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 9.1e-114 414.1 296 73.6
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-113 413.3 292 72.9
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-113 413.3 292 72.9
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.2e-112 409.5 290 74.1
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 2.9e-112 409.1 292 73.6
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 6.5e-112 407.9 290 74.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.4e-111 406.8 290 71.0
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 7.2e-111 404.4 292 72.6
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 9.4e-111 404.1 293 73.7
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 2.1e-110 402.9 292 71.6
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.7e-110 402.5 292 72.3
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 3.0e-109 399.1 299 69.2
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 3.9e-109 398.7 291 73.2
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 5.2e-109 398.3 292 70.2
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.1e-108 397.1 231 84.8
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 2.6e-108 396.0 293 68.9
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 8.2e-107 391.0 293 70.3
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.1e-106 390.6 293 68.6
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 4.1e-106 388.7 297 69.0
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 9.1e-106 387.5 292 69.9
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.5e-100 370.2 292 65.8
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 5.7e-100 368.2 227 78.4
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.7e-100 368.2 291 65.6
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.4e-98 362.8 292 66.4
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.2e-97 360.5 298 63.8
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 3.2e-95 352.4 292 67.1
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.2e-95 352.4 208 84.6
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 5.5e-95 351.7 260 71.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 9.4e-95 350.9 191 89.0
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 5.2e-93 345.1 237 74.7
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 3.4e-92 342.4 293 62.1
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 4.4e-92 342.0 239 74.5
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 6.5e-88 328.2 288 61.1
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 3.6e-86 322.4 285 58.9
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 2.7e-81 306.2 187 77.5
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 4.0e-77 292.4 298 52.0
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.2e-76 290.8 209 71.3
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.6e-76 289.7 191 72.3
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 7.5e-76 288.1 297 53.2
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 4.4e-68 262.3 294 50.7
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.1e-61 239.6 290 49.7
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.9e-58 230.3 295 49.5
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.9e-58 230.3 295 49.5
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.9e-58 230.3 295 49.5
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.0e-52 210.3 263 50.6
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.5e-47 194.1 105 91.4
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.6e-44 183.3 108 83.3
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 6.0e-41 172.2 151 62.3
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.7e-40 170.6 228 47.4
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.0e-37 159.5 153 58.2
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.2e-36 157.9 153 57.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.2e-36 157.9 153 57.5
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 4.5e-36 156.0 85 89.4
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.4e-34 149.1 92 79.3
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.2e-33 147.9 194 42.3
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.1e-30 137.1 106 66.0
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.4e-29 133.7 73 87.7
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.4e-29 133.7 73 87.7
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 9.0e-29 131.7 72 87.5
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.1e-25 120.6 95 70.5
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.9e-23 114.0 68 79.4
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 2.2e-19 100.5 188 38.3
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 3.8e-19 99.8 60 76.7
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 8.4e-19 98.6 128 45.3
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 2.8e-14 83.6 86 54.7
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 5.3e-13 79.3 59 64.4
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.6e-12 77.0 231 30.3
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 5.9e-12 75.9 58 69.0
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 1.3e-06 58.2 37 67.6
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 8.2e-06 55.5 37 62.2


User provided reference genes

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