Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 0.0e+00 1428.3 721 100.0
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 0.0e+00 1285.8 729 91.2
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 0.0e+00 1233.4 720 84.6
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 0.0e+00 1150.6 712 78.4
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 0.0e+00 1146.3 724 77.6
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1145.2 723 77.5
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 0.0e+00 1140.6 724 77.9
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1122.8 726 76.6
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1121.3 722 76.6
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 0.0e+00 1120.9 722 76.3
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1120.5 722 76.5
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 0.0e+00 1120.5 728 75.5
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 0.0e+00 1118.6 707 77.7
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1114.4 722 76.7
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 0.0e+00 1113.2 722 76.9
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 0.0e+00 1108.2 630 85.7
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 0.0e+00 1106.3 725 76.7
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 0.0e+00 1103.2 722 76.2
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1097.4 726 74.8
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 0.0e+00 1096.3 722 75.6
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 0.0e+00 1095.1 722 74.7
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1094.3 722 74.5
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1089.3 722 75.6
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 0.0e+00 1088.2 722 74.4
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 0.0e+00 1081.2 714 73.5
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1075.1 733 73.1
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 6.0e-308 1060.4 720 72.2
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 3.0e-307 1058.1 705 74.3
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.6e-305 1052.4 729 71.2
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.8e-304 1048.9 705 73.2
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 2.0e-303 1045.4 726 72.2
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 3.4e-303 1044.6 725 69.1
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 4.4e-303 1044.3 705 73.0
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 2.9e-302 1041.6 704 72.4
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 8.3e-302 1040.0 719 70.1
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 3.2e-301 1038.1 719 70.0
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-299 1032.7 707 71.9
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 3.9e-299 1031.2 721 69.8
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 6.6e-299 1030.4 704 72.6
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 1.6e-297 1025.8 707 71.6
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 5.8e-295 1017.3 722 71.5
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.7e-294 1015.8 719 70.0
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.1e-293 1013.1 727 68.6
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 7.1e-293 1010.4 726 69.4
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 2.1e-292 1008.8 724 68.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 3.5e-292 1008.1 665 74.4
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 6.0e-292 1007.3 724 68.6
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.0e-291 1006.5 719 69.7
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.0e-291 1006.5 724 68.8
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.1e-290 1003.0 718 69.8
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.9e-290 1002.3 726 69.1
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 4.7e-289 997.7 712 69.2
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 6.2e-289 997.3 719 68.4
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 8.1e-289 996.9 722 67.9
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 4.0e-288 994.6 723 67.5
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 2.0e-287 992.3 722 66.9
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 2.9e-286 988.4 722 66.8
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 8.4e-286 986.9 724 67.3
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 7.1e-285 983.8 722 67.0
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 7.1e-285 983.8 701 68.2
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.6e-284 982.6 721 68.0
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 2.1e-284 982.2 719 68.4
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 4.6e-284 981.1 723 66.4
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.0e-283 979.9 723 66.4
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 3.0e-283 978.4 723 67.1
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 1.1e-282 976.5 724 68.5
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 8.1e-281 970.3 735 65.2
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 1.1e-280 969.9 721 67.1
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 1.4e-280 969.5 723 65.7
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 3.1e-280 968.4 723 65.7
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 1.2e-279 966.5 727 67.0
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 1.2e-279 966.5 729 66.0
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 7.6e-279 963.8 738 65.7
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 1.3e-278 963.0 723 65.4
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.6e-276 956.1 727 64.9
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 3.5e-276 954.9 705 67.8
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 4.6e-276 954.5 666 70.3
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.3e-275 953.0 990 54.7
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.6e-273 946.0 730 63.8
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.4e-272 942.2 651 70.8
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 9.0e-272 940.3 641 71.8
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.5e-271 939.5 710 68.5
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 3.3e-266 921.8 631 71.9
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 9.6e-266 920.2 627 71.9
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 1.8e-264 916.0 541 82.4
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 2.6e-263 912.1 725 64.0
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 2.2e-262 909.1 727 63.0
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.4e-261 906.4 590 75.9
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 2.7e-260 902.1 730 60.5
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 6.7e-259 897.5 591 72.6
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 4.1e-256 888.3 728 60.0
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.5e-247 859.8 561 74.3
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 1.5e-247 859.8 858 53.4
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 7.4e-242 840.9 731 60.7
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.0e-238 828.2 984 51.1
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 1.9e-221 773.1 723 57.4
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 3.4e-202 709.1 451 76.7
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 2.3e-179 633.3 728 45.5
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 3.1e-179 632.9 485 64.9
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 6.8e-171 605.1 699 45.4
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 7.6e-162 575.1 362 77.1
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 4.5e-154 549.3 655 45.0
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.0e-145 521.5 447 59.5
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 5.5e-136 489.2 382 63.1
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 4.4e-109 399.8 263 71.9
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 7.5e-101 372.5 225 81.3
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 2.2e-97 360.9 254 70.1
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 7.5e-85 319.3 260 60.0
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 1.2e-82 312.0 290 57.2
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.8e-70 271.6 166 81.9
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 2.7e-66 257.7 290 49.0
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 3.5e-66 257.3 150 78.0
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.2e-45 189.1 277 40.4
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 2.5e-40 171.4 154 60.4
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 4.3e-40 170.6 277 37.9
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.4e-40 169.9 227 42.3
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 3.7e-31 141.0 136 57.4
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 4.0e-30 137.5 107 67.3
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.2e-29 136.0 112 58.9
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-29 134.4 161 42.9
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.8e-29 133.7 154 44.8
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 8.4e-28 129.8 115 60.0
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 8.4e-28 129.8 119 58.0
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 1.9e-27 128.6 98 67.3
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 4.6e-26 124.0 74 70.3
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 8.7e-25 119.8 136 50.0
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 8.2e-23 113.2 104 60.6
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 2.4e-22 111.7 112 51.8
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 9.0e-22 109.8 109 56.0
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 6.5e-20 103.6 79 64.6
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 2.5e-19 101.7 112 49.1
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 7.2e-19 100.1 112 48.2
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 9.3e-19 99.8 70 64.3
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 9.3e-19 99.8 90 58.9
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.6e-18 99.0 60 75.0
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.3e-17 95.1 55 81.8
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.1e-16 92.8 83 60.2
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.9e-16 92.0 129 41.9
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 4.3e-16 90.9 164 34.1
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.8e-15 88.2 97 49.5
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 9.1e-14 83.2 60 68.3
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-13 81.6 93 45.2
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.6e-13 81.6 58 62.1
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 7.7e-13 80.1 60 66.7
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 7.7e-13 80.1 60 66.7
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.2e-12 78.6 70 55.7
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 2.9e-12 78.2 54 64.8
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 1.1e-11 76.3 60 63.3
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 9.4e-11 73.2 621 21.9
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 2.1e-10 72.0 45 73.3
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.0e-09 69.7 53 62.3
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 1.4e-09 69.3 104 45.2
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.8e-06 58.9 33 75.8
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 5.3e-06 57.4 56 57.1


User provided reference genes

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