Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012930 Carpinus fangiana HOM05D002535 ORTHO05D006846 7.4e-71 270.4 133 100.0
Haze_00328 Corylus avellana HOM05D002535 ORTHO05D006846 1.4e-40 169.9 118 77.1
Cfa016132 Carpinus fangiana HOM05D002535 ORTHO05D006846 1.8e-37 159.5 103 79.6
QL09p006081 Quercus lobata HOM05D002535 ORTHO05D006846 4.4e-31 138.3 118 63.6
CiPaw.05G208400 Carya illinoinensis HOM05D002535 ORTHO05D006846 6.3e-30 134.4 118 62.7
GSVIVG01038675001 Vitis vinifera HOM05D002535 ORTHO05D006846 7.2e-26 120.9 109 56.9
Atru.chr12.2507 Acer truncatum HOM05D002535 ORTHO05D006846 3.4e-23 112.1 107 57.0
Atru.chr12.2530 Acer truncatum HOM05D002535 ORTHO05D006846 3.4e-23 112.1 107 57.0
FvH4_7g33260 Fragaria vesca HOM05D002535 ORTHO05D006846 5.7e-23 111.3 101 55.4
FAN03G0390 Fragaria x ananassa HOM05D002535 ORTHO05D006846 5.7e-23 111.3 101 55.4
Actinidia08716 Actinidia chinensis HOM05D002535 ORTHO05D006846 9.8e-23 110.5 90 58.9
Prupe.2G321600 Prunus persica HOM05D002535 ORTHO05D006846 9.8e-23 110.5 106 55.7
CSS0041054 Camellia sinensis var. sinensis HOM05D002535 ORTHO05D006846 3.7e-22 108.6 109 52.3
TAR375G1062 Trochodendron aralioides HOM05D002535 ORTHO05D006846 3.7e-22 108.6 96 54.2
FAN01G2729 Fragaria x ananassa HOM05D002535 ORTHO05D006846 4.8e-22 108.2 101 54.5
DCAR_010560 Daucus carota HOM05D002535 ORTHO05D006846 8.3e-22 107.5 87 60.9
CSS0030602 Camellia sinensis var. sinensis HOM05D002535 ORTHO05D006846 5.4e-21 104.8 105 52.4
Cpa.g.sc3.180 Carica papaya HOM05D002535 ORTHO05D006846 1.6e-20 103.2 105 53.3
Eucgr.K00458 Eucalyptus grandis HOM05D002535 ORTHO05D006846 1.6e-20 103.2 117 53.0
RcHm_v2.0_Chr1g0383251 Rosa chinensis HOM05D002535 ORTHO05D006846 1.0e-19 100.5 101 50.5
Lj1C1030G8 Lonicera japonica HOM05D002535 ORTHO05D006846 2.9e-19 99.0 106 50.0
Peaxi162Scf01026g00257 Petunia axillaris HOM05D002535 ORTHO05D006846 3.8e-19 98.6 87 54.0
MD07G1302400 Malus domestica HOM05D002535 ORTHO05D006846 5.0e-19 98.2 87 58.6
Manes.18G108000 Manihot esculenta HOM05D002535 ORTHO05D006846 8.6e-19 97.4 103 52.4
Sc19g0000400 Simmondsia chinensis HOM05D002535 ORTHO05D006846 8.6e-19 97.4 110 50.9
Ca_05547_v3 Cicer arietinum L. HOM05D002535 ORTHO05D006846 2.5e-18 95.9 124 44.4
Hma1.2p1_0115F.1_g055700 Hydrangea macrophylla HOM05D002535 ORTHO05D006846 2.5e-18 95.9 88 54.5
Cc01_g06440 Coffea canephora HOM05D002535 ORTHO05D006846 3.3e-18 95.5 106 46.2
Nn1g09652 Nelumbo nucifera HOM05D002535 ORTHO05D006846 4.2e-18 95.1 90 54.4
Rhsim03G0218100 Rhododendron simsii HOM05D002535 ORTHO05D006846 4.2e-18 95.1 112 50.9
Sabra12G0000700 Salix brachista HOM05D002535 ORTHO05D006846 7.2e-18 94.4 83 57.8
Sabra12G0007000 Salix brachista HOM05D002535 ORTHO05D006846 7.2e-18 94.4 83 57.8
Nitab4.5_0004582g0020 Nicotiana tabacum HOM05D002535 ORTHO05D006846 1.2e-17 93.6 87 50.6
LjContig00155g0000379 Lotus japonicus HOM05D002535 ORTHO05D006846 2.1e-17 92.8 103 46.6
Nitab4.5_0000021g0180 Nicotiana tabacum HOM05D002535 ORTHO05D006846 2.1e-17 92.8 87 49.4
SGA_v2.0_scaffold44G16838 Striga asiatica HOM05D002535 ORTHO05D006846 2.8e-17 92.4 87 50.6
PGR142G0839 Punica granatum HOM05D002535 ORTHO05D006846 3.6e-17 92.0 106 47.2
vmacro06471 Vaccinium macrocarpon HOM05D002535 ORTHO05D006846 3.6e-17 92.0 87 55.2
Solyc03g080010.3 Solanum lycopersicum HOM05D002535 ORTHO05D006846 4.7e-17 91.7 87 49.4
Sopen03g021730 Solanum pennellii HOM05D002535 ORTHO05D006846 4.7e-17 91.7 87 49.4
ClCG07G009720 Citrullus lanatus HOM05D002535 ORTHO05D006846 6.1e-17 91.3 81 54.3
Hma1.2p1_0115F.1_g055690 Hydrangea macrophylla HOM05D002535 ORTHO05D006846 8.0e-17 90.9 109 47.7
Duzib084G0662 Durio zibethinus HOM05D002535 ORTHO05D006846 1.8e-16 89.7 99 48.5
COL.COLO4_14395 Corchorus olitorius HOM05D002535 ORTHO05D006846 2.3e-16 89.4 117 45.3
Gohir.D12G245800 Gossypium hirsutum HOM05D002535 ORTHO05D006846 3.0e-16 89.0 93 51.6
Gorai.008G263400 Gossypium raimondii HOM05D002535 ORTHO05D006846 3.0e-16 89.0 93 51.6
Potri.012G005000 Populus trichocarpa HOM05D002535 ORTHO05D006846 4.0e-16 88.6 82 54.9
CsaV3_4G009720 Cucumis sativus L. HOM05D002535 ORTHO05D006846 6.8e-16 87.8 81 54.3
Oeu055378.1 Olea europaea HOM05D002535 ORTHO05D006846 8.9e-16 87.4 103 44.7
PSO063G0674 Papaver somniferum HOM05D002535 ORTHO05D006846 1.2e-15 87.0 85 55.3
Ciclev10018840m.g Citrus clementina HOM05D002535 ORTHO05D006846 1.5e-15 86.7 109 42.2
Gohir.A12G245000 Gossypium hirsutum HOM05D002535 ORTHO05D006846 1.5e-15 86.7 93 50.5
Sed0019266 Sechium edule HOM05D002535 ORTHO05D006846 1.5e-15 86.7 87 50.6
TPR.G15887 Trifolium pratense HOM05D002535 ORTHO05D006846 1.5e-15 86.7 105 40.0
ECA238G0251 Erigeron canadensis HOM05D002676 ORTHO05D006846 2.6e-15 85.9 118 40.7
Glyma.02G221300 Glycine max HOM05D002535 ORTHO05D006846 2.6e-15 85.9 102 45.1
ATR0579G153 Amborella trichopoda HOM05D002535 ORTHO05D006846 4.4e-15 85.1 87 43.7
AUR62005953 Chenopodium quinoa HOM05D002535 ORTHO05D006846 4.4e-15 85.1 101 46.5
MBI04_g09825_MAGBIO Magnolia biondii HOM05D002535 ORTHO05D006846 5.7e-15 84.7 109 46.8
Medtr5g068600 Medicago truncatula HOM05D002535 ORTHO05D006846 5.7e-15 84.7 100 45.0
TWI39G1073 Tripterygium wilfordii HOM05D002535 ORTHO05D006846 5.7e-15 84.7 104 46.2
CAN.G303.52 Capsicum annuum HOM05D002535 ORTHO05D006846 9.8e-15 84.0 87 46.0
Migut.F00161 Erythranthe guttata HOM05D002535 ORTHO05D006846 9.8e-15 84.0 100 46.0
Thecc.03G211600 Theobroma cacao HOM05D002535 ORTHO05D006846 1.3e-14 83.6 101 50.5
Lalb_Chr10g0103021 Lupinus albus HOM05D002535 ORTHO05D006846 2.2e-14 82.8 103 41.7
PSO782G3476 Papaver somniferum HOM05D002535 ORTHO05D006846 2.2e-14 82.8 80 55.0
VMungo0647G1626 Vigna mungo HOM05D002535 ORTHO05D006846 2.2e-14 82.8 81 49.4
unitig_748.g7357 Utricularia gibba HOM05D002535 ORTHO05D006846 2.8e-14 82.4 94 44.7
Phvul.008G188400 Phaseolus vulgaris HOM05D002535 ORTHO05D006846 3.7e-14 82.0 102 44.1
arahy.Tifrunner.gnm1.ann1.HMHY7M Arachis hypogaea HOM05D002535 ORTHO05D006846 6.3e-14 81.3 106 45.3
EL10Ac3g05139 Beta vulgaris HOM05D002535 ORTHO05D006846 8.3e-14 80.9 105 43.8
SalBow6G2866 Salvia bowleyana HOM05D002535 ORTHO05D006846 1.1e-13 80.5 83 49.4
Aqoxy5G04389 Aquilegia oxysepala HOM05D002535 ORTHO05D006846 1.4e-13 80.1 112 42.9
arahy.Tifrunner.gnm1.ann1.DLGH4W Arachis hypogaea HOM05D002535 ORTHO05D006846 1.4e-13 80.1 93 48.4
Glyma.14G188900 Glycine max HOM05D002535 ORTHO05D006846 1.8e-13 79.7 102 44.1
HanXRQChr14g0452381 Helianthus annuus HOM05D002535 ORTHO05D006846 3.2e-13 79.0 118 40.7
Hund21077 Selenicereus undatus HOM05D002535 ORTHO05D006846 3.2e-13 79.0 104 43.3
CANSAT21G0133 Cannabis sativa HOM05D002535 ORTHO05D006846 5.4e-13 78.2 103 42.7
Zm00001eb220610 Zea mays HOM05D002535 ORTHO05D006846 7.0e-13 77.8 91 46.2
Lsat_1_v5_gn_2_5220 Lactuca sativa HOM05D002535 ORTHO05D006846 1.2e-12 77.0 106 43.4
Os10g0509000 Oryza sativa ssp. japonica HOM05D002535 ORTHO05D006846 1.2e-12 77.0 90 44.4
Ah.13g071000 Amaranthus hybridus HOM05D002535 ORTHO05D006846 1.7e-11 73.2 104 37.5
HPP92_007410 Vanilla planifolia HOM05D002535 ORTHO05D006846 7.3e-10 67.8 90 41.1
CARHR267280 Cardamine hirsuta HOM05D002535 ORTHO05D006846 3.6e-09 65.5 75 41.3
Sp6g16120 Schrenkiella parvula HOM05D002535 ORTHO05D006846 1.8e-08 63.2 77 39.0
Aa31LG3G9940 Aethionema arabicum HOM05D002535 ORTHO05D006846 2.3e-08 62.8 98 40.8
AL8G29210 Arabidopsis lyrata HOM05D002535 ORTHO05D006846 3.1e-08 62.4 94 37.2
BcaB05g22108 Brassica carinata HOM05D002535 ORTHO05D006846 3.1e-08 62.4 77 39.0
THA.LOC104825164 Tarenaya hassleriana HOM05D002535 ORTHO05D006846 4.0e-08 62.0 96 35.4
AT5G54090 Arabidopsis thaliana HOM05D002535 ORTHO05D006846 5.2e-08 61.6 80 41.2
Thhalv10012724m.g Eutrema salsugineum HOM05D002535 ORTHO05D006846 5.2e-08 61.6 92 34.8
Carub.0008s1437 Capsella rubella HOM05D002535 ORTHO05D006846 2.0e-07 59.7 98 35.7
BraA02t06123Z Brassica rapa HOM05D002535 ORTHO05D006846 7.5e-07 57.8 77 35.1
A02p10580 Brassica napus HOM05D002535 ORTHO05D006846 2.2e-06 56.2 81 35.8
TPR.G27024 Trifolium pratense HOM05D002535 ORTHO05D006846 2.2e-06 56.2 75 36.0
BcaC03g14353 Brassica carinata HOM05D002535 ORTHO05D006846 2.9e-06 55.8 77 33.8
C02p17660 Brassica napus HOM05D002535 ORTHO05D006846 2.9e-06 55.8 77 33.8
BolC2t07896H Brassica oleracea HOM05D002535 ORTHO05D006846 2.9e-06 55.8 77 33.8


User provided reference genes

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