Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 4.6e-299 1030.4 498 100.0
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 1.1e-268 929.5 522 87.9
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 6.7e-258 893.6 511 85.9
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 1.5e-246 855.9 495 82.8
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 1.0e-245 853.2 489 82.4
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 8.4e-245 850.1 454 89.2
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 1.4e-244 849.4 498 80.9
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 1.9e-244 849.0 496 81.9
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 2.5e-244 848.6 495 81.4
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 3.2e-244 848.2 493 80.3
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 9.3e-244 846.7 491 81.5
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 2.1e-243 845.5 484 82.0
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 2.7e-243 845.1 487 81.3
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 6.1e-243 844.0 492 80.7
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 6.7e-242 840.5 489 81.2
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 1.5e-241 839.3 473 84.1
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 3.3e-241 838.2 499 79.6
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 7.4e-241 837.0 487 81.1
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 7.4e-241 837.0 495 81.2
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 1.6e-240 835.9 483 81.8
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 2.8e-240 835.1 496 81.0
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 6.3e-240 833.9 495 80.8
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 1.4e-239 832.8 494 78.9
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 2.4e-239 832.0 484 79.5
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 5.3e-239 830.9 487 79.3
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 1.7e-237 825.9 505 78.4
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 2.2e-237 825.5 484 79.8
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 3.8e-237 824.7 483 80.5
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 6.5e-237 823.9 510 78.0
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 8.5e-237 823.5 507 77.3
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.1e-236 823.2 491 80.7
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 2.5e-236 822.0 484 81.6
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.5e-236 822.0 494 79.6
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 3.2e-236 821.6 524 76.3
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 7.9e-235 817.0 514 75.7
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 8.8e-234 813.5 494 78.7
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 1.5e-233 812.8 498 78.7
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 2.0e-233 812.4 498 77.5
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 2.5e-233 812.0 482 79.3
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 4.8e-232 807.7 499 77.0
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 6.3e-232 807.4 482 78.6
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 3.1e-231 805.1 488 77.9
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 4.1e-231 804.7 494 78.5
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 7.7e-230 800.4 497 76.1
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 1.0e-229 800.0 528 74.8
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 2.2e-229 798.9 482 78.0
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 3.8e-229 798.1 486 78.2
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 3.8e-229 798.1 482 78.0
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 8.5e-229 797.0 486 79.2
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 1.9e-228 795.8 490 77.3
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 3.2e-228 795.0 493 77.1
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 7.2e-228 793.9 501 75.4
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 3.6e-227 791.6 482 78.0
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 3.9e-226 788.1 486 77.0
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.1e-225 786.6 482 77.8
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 9.7e-225 783.5 485 77.5
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 9.1e-223 776.9 483 76.2
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 1.2e-222 776.5 484 76.4
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 2.9e-221 771.9 484 76.0
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 2.9e-221 771.9 543 69.8
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 8.5e-221 770.4 485 75.1
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 7.2e-220 767.3 438 83.8
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 1.2e-219 766.5 485 75.1
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 2.1e-219 765.8 484 75.4
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 1.0e-218 763.5 482 75.5
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 6.7e-218 760.8 532 70.1
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 8.8e-218 760.4 454 79.3
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 5.7e-217 757.7 489 73.2
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 9.7e-217 756.9 500 72.4
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 2.4e-215 752.3 490 73.3
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.2e-214 750.0 473 76.5
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 8.5e-213 743.8 525 69.3
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 1.0e-210 736.9 519 69.9
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 4.0e-210 734.9 483 71.8
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 1.5e-209 733.0 490 72.7
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 1.4e-207 726.5 483 70.8
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 2.4e-207 725.7 494 71.3
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 4.1e-207 724.9 566 65.0
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 1.2e-206 723.4 495 69.7
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.3e-205 719.9 499 71.7
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.0e-202 710.3 455 72.5
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 3.0e-202 708.8 515 68.2
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 1.1e-199 700.3 501 69.1
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 3.1e-199 698.7 509 69.4
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 5.5e-196 688.0 495 69.1
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 3.7e-192 675.2 488 66.6
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 9.2e-191 670.6 484 69.6
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 8.9e-186 654.1 392 81.1
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 1.3e-181 640.2 493 62.5
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.3e-181 640.2 392 79.8
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 3.0e-181 639.0 497 62.6
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 1.9e-180 636.3 478 63.0
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 7.5e-177 624.4 488 65.2
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 2.1e-174 616.3 476 62.0
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 3.5e-174 615.5 386 78.0
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 1.9e-172 609.8 394 75.1
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 2.6e-169 599.4 395 74.4
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 3.5e-166 589.0 384 73.7
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 6.0e-166 588.2 400 71.8
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 1.7e-157 560.1 482 57.9
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.4e-154 550.4 360 73.3
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 1.6e-147 526.9 484 54.8
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 1.4e-143 513.8 326 74.2
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 4.2e-143 512.3 354 71.2
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 2.1e-139 500.0 483 55.7
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 6.7e-133 478.4 367 65.9
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.1e-126 456.8 252 84.5
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 2.2e-123 446.8 475 49.5
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 6.3e-123 445.3 391 57.0
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 1.3e-120 437.6 470 47.4
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 1.9e-119 433.7 288 70.8
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.0e-117 427.9 297 70.0
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 2.7e-110 403.3 349 58.7
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 5.5e-95 352.4 187 85.0
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 3.5e-73 280.0 165 80.6
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 7.8e-65 252.3 493 35.7
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 1.3e-51 208.4 108 84.3
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.1e-45 188.7 94 85.1
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.1e-33 147.9 110 68.2
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 3.5e-33 147.1 131 58.8
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 2.3e-32 144.4 78 82.1
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 3.0e-32 144.1 69 88.4
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 1.6e-30 138.3 93 68.8
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 2.4e-26 124.4 214 36.9
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 3.3e-23 114.0 70 74.3
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.6e-22 111.7 97 57.7
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 5.8e-20 103.2 199 34.7
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.5e-15 88.6 54 79.6
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 1.1e-10 72.4 51 66.7
BolC2t10740H Brassica oleracea HOM05D005885 ORTHO05D023940 1.9e-07 61.6 48 60.4
BolC1t01666H Brassica oleracea HOM05D005885 ORTHO05D023940 5.7e-07 60.1 50 54.0


User provided reference genes

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