Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 3.3e-159 565.5 394 100.0
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.0e-107 394.4 379 78.6
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 9.4e-106 387.9 224 94.6
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 3.3e-103 379.4 411 70.6
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 2.2e-102 376.7 214 93.0
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 2.0e-100 370.2 285 85.3
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 5.9e-100 368.6 402 73.4
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 1.5e-98 364.0 424 63.2
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 2.5e-98 363.2 212 90.6
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.5e-98 363.2 212 90.6
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.6e-97 360.5 394 73.9
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 4.7e-97 359.0 215 90.7
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 6.1e-97 358.6 213 88.7
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-96 356.7 214 87.4
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 3.3e-95 352.8 212 88.7
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 3.3e-95 352.8 215 86.5
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 4.4e-95 352.4 430 65.1
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 5.7e-95 352.1 212 88.2
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 9.7e-95 351.3 273 78.4
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 9.7e-95 351.3 215 87.4
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.3e-94 350.9 214 85.5
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.3e-94 350.9 209 88.5
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.3e-94 350.9 418 64.8
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 1.7e-94 350.5 210 87.1
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.7e-94 350.5 282 75.9
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 2.2e-94 350.1 213 86.9
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 2.8e-94 349.7 212 86.8
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 4.8e-94 349.0 209 88.5
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 4.8e-94 349.0 212 87.7
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 4.8e-94 349.0 209 88.5
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 6.3e-94 348.6 281 71.5
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 6.3e-94 348.6 213 86.4
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.1e-93 347.8 213 86.4
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.1e-93 347.8 375 69.1
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.1e-93 347.8 276 83.0
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.4e-93 347.4 215 86.5
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 2.4e-93 346.7 213 86.4
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 2.4e-93 346.7 213 86.4
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.1e-93 346.3 427 66.0
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.1e-93 346.3 413 65.9
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 3.1e-93 346.3 207 89.4
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 4.1e-93 345.9 215 85.1
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 4.1e-93 345.9 212 84.9
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 5.3e-93 345.5 374 70.1
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 5.3e-93 345.5 210 86.2
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 5.3e-93 345.5 360 66.9
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 5.3e-93 345.5 213 85.4
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 7.0e-93 345.1 424 66.0
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 7.0e-93 345.1 276 79.3
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.6e-92 344.0 214 86.0
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.6e-92 344.0 446 59.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.6e-92 344.0 218 84.9
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.7e-92 343.2 205 87.8
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.5e-92 342.4 419 66.1
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 5.9e-92 342.0 214 85.5
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 7.7e-92 341.7 216 83.8
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 7.7e-92 341.7 204 88.2
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.0e-91 341.3 216 83.8
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.3e-91 340.9 283 80.9
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.3e-91 340.9 210 84.8
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.7e-91 340.5 215 82.8
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 1.7e-91 340.5 203 89.7
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.7e-91 340.5 363 68.9
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 3.8e-91 339.3 358 69.3
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 5.0e-91 339.0 214 85.0
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 5.0e-91 339.0 214 85.0
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 5.0e-91 339.0 347 71.2
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 6.5e-91 338.6 206 85.4
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 8.5e-91 338.2 393 68.4
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 9.4e-90 334.7 209 84.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 1.6e-89 334.0 271 80.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 2.1e-89 333.6 208 84.6
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 3.6e-89 332.8 212 84.0
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 8.0e-89 331.6 354 68.1
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.4e-88 330.9 207 84.1
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 4.0e-88 329.3 406 63.3
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 8.8e-88 328.2 208 83.2
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.8e-88 328.2 421 64.4
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 8.8e-88 328.2 364 73.4
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 1.3e-86 324.3 213 79.8
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 2.8e-86 323.2 253 72.7
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.1e-85 319.7 196 86.7
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 3.1e-85 319.7 209 79.9
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 5.4e-85 318.9 209 79.9
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 9.1e-85 318.2 202 83.7
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.6e-84 317.4 193 85.5
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.7e-83 313.9 215 75.8
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 2.3e-83 313.5 208 79.3
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 5.0e-83 312.4 259 80.7
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 4.2e-82 309.3 182 90.1
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 7.2e-82 308.5 215 73.5
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 6.8e-80 302.0 388 67.0
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 9.8e-79 298.1 407 57.5
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.4e-77 294.3 184 83.2
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 7.0e-77 292.0 184 82.6
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.1e-74 284.6 212 70.3
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 2.1e-73 280.4 225 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 3.4e-71 273.1 203 67.5
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 5.8e-71 272.3 210 66.7
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.4e-69 267.7 192 72.4
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 4.1e-69 266.2 200 68.5
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.3e-67 261.2 203 70.4
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 2.8e-65 253.4 157 87.3
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.7e-62 244.2 188 71.8
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 6.6e-59 232.3 169 75.7
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 2.5e-58 230.3 381 58.3
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 3.2e-53 213.4 193 61.1
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.3e-42 176.4 147 61.9
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 2.5e-34 150.6 94 84.0
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 3.4e-31 140.2 115 61.7
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.9e-30 137.1 103 76.7
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 3.5e-28 130.2 79 83.5
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 8.7e-27 125.6 205 41.5
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 4.3e-26 123.2 76 82.9
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 1.1e-24 118.6 207 36.7
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.8e-24 117.9 63 90.5
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 4.0e-24 116.7 80 78.8
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 2.0e-23 114.4 64 90.6
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 8.7e-19 99.0 63 79.4
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 1.9e-18 97.8 56 87.5
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 4.3e-18 96.7 180 38.3
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 2.8e-17 94.0 63 77.8
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.8e-17 94.0 58 77.6
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.8e-17 94.0 107 49.5
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 6.2e-17 92.8 67 71.6
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 3.1e-16 90.5 168 37.5
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 6.5e-14 82.8 138 34.1
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 6.5e-14 82.8 138 34.1
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 8.4e-14 82.4 155 38.1
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 1.4e-13 81.6 52 75.0
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 2.2e-09 67.8 59 64.4
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 4.1e-08 63.5 36 83.3
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 5.3e-08 63.2 35 82.9
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 2.2e-06 57.8 153 25.5


User provided reference genes

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