Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 2030.8 1040 100.0
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1837.4 1108 87.8
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1714.9 1073 83.6
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1690.2 1077 82.9
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1606.3 1075 76.9
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1592.8 1072 76.3
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1587.0 1073 76.3
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1586.2 1073 76.0
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1580.5 1079 75.6
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1574.3 1076 75.8
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1570.8 1073 75.7
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1565.8 1075 75.5
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1557.3 1073 75.2
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1554.7 1073 74.2
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1553.1 1073 74.3
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1548.1 1072 74.8
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1547.3 1074 74.2
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1546.9 1073 73.9
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1524.6 1077 73.9
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1523.8 1085 73.0
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1517.3 1075 72.8
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1515.0 1074 73.6
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1512.3 1074 73.3
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1511.1 1074 71.6
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1505.0 1074 73.4
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1493.8 1072 71.0
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1492.6 1072 71.2
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1492.6 1079 71.4
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1490.7 1076 71.3
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1489.9 1093 72.4
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1487.6 1073 72.6
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1483.0 1072 71.5
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1475.3 1072 70.1
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1473.4 997 74.6
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1469.9 1080 69.7
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1469.5 1073 70.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1468.4 1074 70.9
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1468.0 1086 70.8
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1467.6 1076 70.6
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1464.1 1009 73.8
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1462.2 1078 69.7
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1462.2 1085 69.6
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1455.3 1079 69.9
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1454.5 1074 69.9
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1446.4 1076 69.1
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1445.6 1078 70.7
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1444.1 1099 68.7
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1441.8 948 78.0
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1441.8 1072 69.8
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1440.2 1072 69.7
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1439.5 1074 69.3
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1424.5 1080 68.5
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1417.9 1081 68.1
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1412.5 1147 66.2
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1404.4 1073 68.4
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1399.8 1073 68.1
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1398.6 1076 68.2
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1396.7 1072 68.7
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1395.9 1077 68.2
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1395.9 1164 64.2
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1394.0 1092 66.4
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1389.8 1121 66.2
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1384.4 1078 67.7
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1380.5 975 72.4
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1375.5 1006 71.0
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1375.5 947 74.1
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1374.4 949 75.8
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1366.7 965 73.1
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1330.1 1227 60.0
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1327.8 988 68.7
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1321.6 1099 64.8
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1293.9 1043 64.7
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1285.8 1075 62.8
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1284.6 978 69.1
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1284.2 1017 65.0
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1282.3 854 76.5
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1223.0 982 64.0
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1193.7 1191 58.1
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1180.6 887 70.0
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1157.5 1090 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1152.5 1032 58.0
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1142.9 1122 56.9
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1140.6 1033 57.2
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1120.1 1039 56.7
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1119.0 967 62.4
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1103.2 1108 55.8
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 8.9e-305 1050.4 751 69.6
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 1.6e-301 1039.6 1017 51.9
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 8.4e-279 964.1 1012 52.0
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.4e-273 946.0 663 73.3
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 6.9e-265 917.9 1092 51.0
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 9.0e-257 891.0 997 51.5
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 2.6e-256 889.4 1045 47.2
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 9.3e-254 880.9 1051 47.5
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 7.2e-230 801.6 584 69.7
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 7.4e-227 791.6 518 80.7
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.7e-223 780.4 620 66.0
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 8.0e-221 771.5 623 68.7
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.5e-219 767.3 598 67.9
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.2e-208 731.1 472 76.9
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.0e-183 646.7 459 72.1
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.7e-181 639.4 809 49.3
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.7e-178 630.9 501 67.5
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 3.3e-174 616.7 410 75.1
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 4.2e-169 599.7 397 74.8
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 9.9e-155 552.0 599 53.4
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 7.6e-139 499.2 382 70.2
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 5.1e-135 486.5 328 74.4
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 4.8e-133 479.9 392 66.1
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.0e-131 474.6 285 84.6
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.6e-110 404.4 315 69.2
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.6e-107 395.2 810 37.0
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 4.2e-105 387.1 351 62.7
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 7.5e-102 376.3 257 70.8
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.7e-102 375.9 241 78.0
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.7e-96 357.1 269 71.4
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.6e-82 310.1 271 61.3
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.4e-68 265.0 194 69.1
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 2.2e-61 241.9 175 74.9
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 6.0e-59 233.8 188 64.9
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 1.1e-57 229.6 184 63.6
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 5.8e-54 217.2 307 39.1
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 9.3e-44 183.3 150 60.7
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.9e-39 167.2 112 73.2
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 3.4e-38 164.9 105 75.2
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 1.3e-37 162.9 105 75.2
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.4e-36 157.5 138 58.0
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 9.3e-36 156.8 203 44.8
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 1.3e-34 152.9 125 59.2
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 8.7e-34 150.2 127 67.7
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 8.7e-34 150.2 127 67.7
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 5.6e-33 147.5 90 77.8
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 4.8e-32 144.4 100 70.0
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.2e-30 139.8 111 62.2
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 3.4e-30 138.3 107 67.3
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 2.2e-29 135.6 99 65.7
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.1e-27 129.0 120 55.8
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 4.1e-23 114.8 73 71.2
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 6.9e-23 114.0 73 78.1
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.5e-22 112.8 111 51.4
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.4e-20 106.3 205 37.1
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 4.6e-19 101.3 69 72.5
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 5.1e-18 97.8 67 77.6
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.8e-15 89.4 103 52.4
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 7.7e-14 84.0 51 72.5
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 1.3e-13 83.2 55 70.9
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 5.5e-12 77.8 54 66.7
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 2.7e-11 75.5 59 66.1
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 2.8e-08 65.5 37 78.4
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 2.8e-08 65.5 45 68.9
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 2.4e-07 62.4 88 37.5
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 4.1e-07 61.6 44 63.6
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 4.1e-07 61.6 44 63.6
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 4.1e-07 61.6 44 63.6
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 6.9e-07 60.8 44 63.6
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 2.6e-06 58.9 43 62.8
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 5.9e-06 57.8 44 59.1


User provided reference genes

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