Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 5.2e-190 667.5 336 100.0
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 2.8e-183 645.2 336 96.1
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 3.5e-162 575.1 338 86.1
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 3.0e-153 545.4 360 78.1
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 4.2e-147 525.0 332 79.8
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.6e-146 521.9 334 79.3
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.6e-146 521.5 334 79.0
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 3.3e-144 515.4 335 78.2
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 5.7e-144 514.6 334 78.7
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 5.7e-144 514.6 336 76.8
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 7.4e-144 514.2 332 77.4
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.7e-143 513.1 331 76.4
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 2.0e-141 506.1 336 74.1
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 2.6e-141 505.8 336 75.9
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 3.4e-141 505.4 329 76.6
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 3.8e-140 501.9 336 73.8
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 5.0e-140 501.5 341 75.7
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 3.2e-139 498.8 336 75.6
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.2e-139 498.8 378 69.8
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 3.2e-139 498.8 330 76.1
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 3.2e-139 498.8 336 74.4
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 9.4e-139 497.3 335 73.7
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 9.4e-139 497.3 336 72.6
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.2e-138 496.9 336 74.1
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.2e-138 496.9 336 74.7
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.6e-138 496.5 335 73.4
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 2.7e-138 495.7 336 73.8
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 7.9e-138 494.2 332 75.6
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 3.0e-137 492.3 336 74.4
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 6.7e-137 491.1 336 73.8
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 3.3e-136 488.8 333 73.9
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 7.4e-136 487.6 333 73.6
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 1.7e-135 486.5 336 72.9
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 2.8e-135 485.7 335 72.8
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 3.7e-135 485.3 348 71.8
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.8e-134 483.0 336 74.1
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 4.1e-134 481.9 333 73.6
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 5.9e-133 478.0 335 72.5
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 2.9e-132 475.7 331 72.8
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 8.5e-132 474.2 330 71.8
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 7.2e-131 471.1 333 71.2
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 2.1e-130 469.5 339 72.0
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 6.1e-130 468.0 337 70.3
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.5e-128 463.4 335 71.3
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.6e-128 462.6 333 70.0
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 3.3e-128 462.2 336 69.6
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 5.7e-128 461.5 338 71.0
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 9.7e-128 460.7 334 69.5
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 9.7e-128 460.7 336 67.9
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 1.3e-127 460.3 336 67.9
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.7e-127 459.9 336 70.2
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.7e-127 459.9 332 70.2
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 2.0e-125 453.0 338 68.9
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 3.5e-125 452.2 335 68.4
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.9e-124 449.1 332 70.2
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 9.4e-123 444.1 333 67.6
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 1.2e-122 443.7 331 66.2
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 2.7e-122 442.6 330 66.1
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.7e-122 442.6 334 67.4
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 6.1e-122 441.4 324 73.8
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.8e-121 437.6 338 67.5
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.8e-121 437.6 338 67.5
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 3.3e-120 435.6 331 66.2
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.3e-119 433.7 347 64.0
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 4.8e-119 431.8 336 64.3
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 2.4e-118 429.5 332 67.8
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 9.1e-118 427.6 332 67.5
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 9.1e-118 427.6 332 65.7
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 3.6e-114 415.6 292 71.9
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 8.8e-113 411.0 336 63.1
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 5.4e-110 401.7 342 59.9
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 5.4e-110 401.7 333 61.6
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 1.5e-107 393.7 339 60.2
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 1.9e-107 393.3 337 60.5
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 3.6e-106 389.0 331 61.3
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 3.6e-106 389.0 337 60.5
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 3.6e-106 389.0 337 60.5
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 8.0e-106 387.9 330 60.3
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 3.0e-105 386.0 331 61.0
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 5.2e-105 385.2 334 60.8
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 8.9e-105 384.4 331 60.4
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.5e-104 383.6 336 59.8
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 2.6e-104 382.9 331 60.7
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.2e-103 379.8 302 69.2
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 2.8e-103 379.4 338 60.1
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.8e-103 379.4 355 56.9
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 3.1e-102 375.9 328 59.5
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 3.5e-101 372.5 336 57.1
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 6.6e-100 368.2 336 59.2
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 1.9e-99 366.7 248 76.6
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 8.0e-98 361.3 336 58.0
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 6.8e-97 358.2 336 58.0
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 9.8e-96 354.4 310 60.3
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 2.0e-93 346.7 336 56.5
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 6.6e-92 341.7 336 56.2
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.7e-79 300.4 275 57.8
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 6.4e-79 298.5 246 64.6
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 8.3e-79 298.1 335 50.4
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.5e-75 287.3 358 45.8
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 3.4e-72 276.2 345 46.7
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 5.8e-64 248.8 166 73.5
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 2.7e-61 240.0 313 45.4
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 2.7e-61 240.0 462 35.3
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 8.4e-55 218.4 340 39.1
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 2.7e-53 213.4 190 59.5
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 7.9e-53 211.8 150 72.0
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 6.7e-52 208.8 171 65.5
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 2.0e-48 197.2 338 35.2
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 5.8e-48 195.7 178 60.7
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 2.1e-37 160.6 151 58.3
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 6.7e-36 155.6 148 52.7
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.5e-35 154.5 157 51.6
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.5e-35 153.7 159 49.1
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 4.5e-32 142.9 151 49.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.8e-25 120.9 81 67.9
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.0e-23 115.2 58 98.3
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 2.1e-21 107.5 133 48.9
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 7.9e-21 105.5 72 66.7
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 1.8e-20 104.4 63 73.0
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.7e-18 97.8 75 64.0
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 2.2e-15 87.4 132 37.1
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 1.5e-11 74.7 57 57.9
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 1.8e-09 67.8 57 66.7
SHI28985 Sapria himalayana HOM05D000023 ORTHO05D000014 2.9e-07 60.5 53 54.7
Dinv43551 Davidia involucrata HOM05D006268 ORTHO05D180404 7.2e-06 55.8 81 44.4


User provided reference genes

Program Settings