Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.3e-26 120.9 61 100.0
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.1e-24 115.9 58 98.3
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 6.9e-24 113.2 58 94.8
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 2.1e-20 101.7 60 85.0
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 2.4e-16 88.2 58 75.9
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.1e-16 87.8 58 72.4
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 4.1e-16 87.4 58 79.3
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.1e-16 87.4 58 79.3
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 4.1e-16 87.4 56 76.8
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 9.0e-16 86.3 58 77.6
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.2e-15 85.9 58 70.7
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.2e-15 85.9 56 80.4
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.5e-15 85.5 60 70.0
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 1.3e-14 82.4 58 65.5
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 2.9e-14 81.3 58 69.0
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 2.9e-14 81.3 58 67.2
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 3.8e-14 80.9 59 72.9
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 3.8e-14 80.9 58 70.7
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 8.5e-14 79.7 58 62.1
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 1.1e-13 79.3 58 65.5
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.4e-13 79.0 58 70.7
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.4e-13 79.0 59 71.2
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 2.5e-13 78.2 56 64.3
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 2.5e-13 78.2 59 71.2
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 3.2e-13 77.8 58 69.0
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 3.2e-13 77.8 58 62.1
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 3.2e-13 77.8 58 69.0
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 3.2e-13 77.8 58 63.8
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 4.2e-13 77.4 58 69.0
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 4.2e-13 77.4 58 67.2
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 5.5e-13 77.0 58 62.1
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 5.5e-13 77.0 50 72.0
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 9.4e-13 76.3 58 65.5
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.2e-12 75.9 55 63.6
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.2e-12 75.9 58 65.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 1.2e-12 75.9 50 70.0
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.2e-12 75.9 58 60.3
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 1.6e-12 75.5 58 67.2
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.6e-12 75.5 59 64.4
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.6e-12 75.5 58 62.1
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.6e-12 75.5 58 60.3
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.6e-12 75.5 58 63.8
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 4.6e-12 73.9 58 69.0
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 6.1e-12 73.6 58 69.0
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 6.1e-12 73.6 58 65.5
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.0e-11 72.8 58 58.6
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 1.0e-11 72.8 59 61.0
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 1.4e-11 72.4 48 68.8
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.8e-11 72.0 58 63.8
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 2.3e-11 71.6 58 60.3
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 3.0e-11 71.2 58 56.9
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 3.0e-11 71.2 58 56.9
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 3.0e-11 71.2 47 63.8
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 5.1e-11 70.5 53 60.4
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 6.7e-11 70.1 58 65.5
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 6.7e-11 70.1 60 60.0
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.7e-11 70.1 46 78.3
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 8.8e-11 69.7 58 62.1
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 8.8e-11 69.7 58 55.2
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 8.8e-11 69.7 58 55.2
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.1e-10 69.3 58 58.6
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 1.5e-10 68.9 58 58.6
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.5e-10 68.9 58 58.6
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 2.0e-10 68.6 58 56.9
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 2.6e-10 68.2 49 65.3
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 2.6e-10 68.2 46 69.6
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.6e-10 68.2 55 56.4
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 3.3e-10 67.8 58 58.6
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 3.3e-10 67.8 42 69.0
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 4.4e-10 67.4 58 58.6
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 4.4e-10 67.4 58 56.9
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 5.7e-10 67.0 58 58.6
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 5.7e-10 67.0 58 62.1
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 5.7e-10 67.0 41 68.3
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 5.7e-10 67.0 58 58.6
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 7.4e-10 66.6 58 55.2
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 7.4e-10 66.6 58 58.6
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 7.4e-10 66.6 42 66.7
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 7.4e-10 66.6 47 61.7
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 9.7e-10 66.2 56 69.6
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 9.7e-10 66.2 50 60.0
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 9.7e-10 66.2 60 55.0
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.3e-09 65.9 60 56.7
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.7e-09 65.5 49 63.3
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.7e-09 65.5 49 63.3
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 2.2e-09 65.1 49 63.3
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.2e-09 65.1 49 63.3
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.2e-09 65.1 49 63.3
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 2.2e-09 65.1 60 55.0
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 2.2e-09 65.1 58 51.7
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 3.7e-09 64.3 47 66.0
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 6.3e-09 63.5 46 60.9
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.2e-09 63.2 57 59.6
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.2e-09 63.2 57 59.6
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 8.2e-09 63.2 50 56.0
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 1.1e-08 62.8 42 64.3
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.4e-08 62.4 58 51.7
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.8e-08 62.0 37 59.5
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 3.1e-08 61.2 47 57.4
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 5.3e-08 60.5 44 52.3
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 1.5e-07 58.9 41 58.5
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 1.3e-06 55.8 37 64.9
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 2.2e-06 55.1 42 50.0
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 2.2e-06 55.1 46 58.7
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.9e-06 54.7 41 53.7
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.9e-06 54.7 41 53.7
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 5.0e-06 53.9 46 60.9


User provided reference genes

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