Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 1.0e-242 843.6 639 100.0
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 4.4e-222 775.0 628 95.4
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 6.2e-208 728.0 665 88.6
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 1.8e-199 699.9 666 87.2
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 1.8e-199 699.9 666 87.1
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 3.9e-186 655.6 658 84.0
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 3.1e-183 646.0 681 81.1
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.0e-181 641.0 662 81.7
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 2.2e-181 639.8 666 81.8
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.9e-181 639.4 656 82.3
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 5.5e-180 635.2 662 81.9
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 5.5e-180 635.2 656 82.9
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.8e-178 630.2 635 83.9
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 5.1e-178 628.6 658 81.9
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.9e-177 626.7 658 82.8
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 1.3e-176 624.0 658 82.1
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.6e-176 623.6 662 81.3
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.1e-175 619.0 644 81.7
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 5.9e-174 615.1 655 83.1
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 1.0e-173 614.4 666 60.7
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 7.2e-172 608.2 656 81.7
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 1.2e-171 607.4 659 80.7
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 2.7e-171 606.3 660 80.6
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 1.4e-170 604.0 643 74.2
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 3.0e-170 602.8 665 80.3
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 3.9e-170 602.4 669 80.1
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.9e-170 602.4 657 80.2
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 3.7e-168 595.9 662 79.3
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-168 595.9 705 62.1
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 6.3e-168 595.1 656 80.6
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 8.2e-168 594.7 642 80.2
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 1.4e-167 594.0 639 81.4
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 3.1e-167 592.8 657 81.0
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 6.9e-167 591.7 662 80.1
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 5.9e-166 588.6 667 79.6
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 1.0e-165 587.8 654 82.0
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 1.1e-164 584.3 676 68.6
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 5.5e-164 582.0 639 79.8
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 9.4e-164 581.3 672 76.5
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 1.0e-162 577.8 648 81.8
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.5e-161 573.9 662 76.6
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 9.7e-161 571.2 679 78.2
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 5.3e-159 565.5 650 78.6
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 5.3e-159 565.5 638 79.9
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.0e-157 561.2 660 78.3
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 1.0e-157 561.2 638 77.4
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 7.2e-156 555.1 655 79.4
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.4e-154 550.8 756 60.4
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.5e-153 547.4 671 75.9
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 8.2e-152 541.6 672 75.7
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.6e-150 537.3 653 77.0
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 2.0e-150 537.0 680 58.8
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 1.0e-149 534.6 662 77.3
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 2.2e-149 533.5 666 75.1
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 3.8e-149 532.7 652 74.1
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.5e-148 530.8 677 73.6
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.6e-147 527.3 626 78.6
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 6.1e-147 525.4 669 73.7
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 1.4e-146 524.2 659 68.3
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.4e-146 524.2 673 74.1
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 3.0e-146 523.1 638 79.5
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 1.2e-145 521.2 807 50.4
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 3.4e-145 519.6 674 74.0
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.4e-143 514.2 639 77.6
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.9e-142 508.8 650 48.6
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 2.5e-140 503.4 523 87.8
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 3.6e-139 499.6 665 54.1
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 6.3e-136 488.8 668 73.7
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.4e-135 487.6 681 61.8
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 3.3e-132 476.5 641 72.2
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 3.3e-132 476.5 658 72.6
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 4.7e-131 472.6 801 50.7
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 6.1e-131 472.2 676 70.6
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 1.0e-130 471.5 614 72.8
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 4.0e-130 469.5 713 70.7
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 8.9e-130 468.4 667 57.9
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 9.8e-129 464.9 690 61.0
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 1.8e-127 460.7 636 72.5
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.6e-123 447.6 514 72.8
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 3.6e-123 446.4 643 67.0
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 3.6e-123 446.4 592 75.0
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 6.2e-123 445.7 635 74.3
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 1.0e-122 444.9 617 75.9
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.4e-122 444.5 651 71.3
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 3.4e-121 439.9 617 76.8
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 4.4e-121 439.5 651 71.1
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 7.5e-121 438.7 652 71.5
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.7e-120 437.6 640 73.3
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 1.1e-119 434.9 625 75.0
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 4.6e-118 429.5 630 73.8
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 4.3e-116 422.9 668 69.8
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 1.2e-115 421.4 660 69.4
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 2.1e-115 420.6 668 69.6
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 6.2e-115 419.1 690 64.9
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.1e-114 418.3 634 74.9
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 8.9e-114 415.2 638 73.2
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 6.4e-112 409.1 648 71.3
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 6.4e-112 409.1 651 61.8
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 3.0e-109 400.2 356 58.1
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 2.3e-106 390.6 651 68.4
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 1.2e-105 388.3 644 71.7
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.2e-105 388.3 651 69.3
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 2.0e-105 387.5 631 72.3
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 2.0e-105 387.5 644 72.0
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.2e-104 384.0 601 74.0
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 8.1e-99 365.5 416 55.3
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.1e-98 365.2 345 56.2
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 4.0e-90 336.7 381 52.2
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 6.2e-83 312.8 456 78.7
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 2.3e-77 294.3 344 55.2
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.1e-76 292.0 347 80.7
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 9.6e-76 288.9 359 48.2
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 1.4e-71 275.0 287 58.9
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 2.5e-71 274.2 587 52.6
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 2.5e-71 274.2 420 78.6
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 2.7e-70 270.8 425 79.5
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 3.7e-67 260.4 405 46.4
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.9e-61 240.4 425 76.7
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-60 238.8 427 75.9
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 1.5e-60 238.4 653 59.4
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-59 233.8 427 70.7
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 6.9e-58 229.6 119 94.1
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 1.3e-56 225.3 693 55.7
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 5.0e-56 223.4 693 55.0
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 2.1e-54 218.0 463 42.8
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 3.9e-53 213.8 133 80.5
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 9.7e-52 209.1 383 37.1
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.7e-49 199.5 120 79.2
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 5.0e-48 196.8 290 42.1
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 3.2e-39 167.5 115 71.3
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 1.2e-38 165.6 260 43.1
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 6.7e-37 159.8 385 75.3
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 1.2e-36 159.1 388 75.0
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 4.4e-36 157.1 400 60.0
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 7.5e-36 156.4 365 46.3
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.2e-35 154.8 121 67.8
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-34 152.5 136 58.8
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.6e-33 148.7 78 88.5
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.0e-32 146.0 79 86.1
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 1.1e-31 142.5 201 48.8
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.4e-31 139.4 135 50.4
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.2e-30 139.0 219 46.6
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 3.6e-30 137.5 135 51.1
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 4.7e-30 137.1 290 42.1
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.1e-30 136.7 135 49.6
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 8.0e-30 136.3 137 53.3
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-29 136.0 135 51.1
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-29 135.2 135 50.4
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 3.0e-29 134.4 135 48.9
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 3.0e-29 134.4 135 48.9
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 6.8e-29 133.3 79 81.0
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 8.3e-27 126.3 143 53.1
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.7e-25 121.3 89 61.8
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.5e-23 115.5 185 45.9
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 3.3e-23 114.4 362 44.2
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 3.6e-22 110.9 370 31.9
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.0e-21 107.8 343 35.6
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 4.0e-21 107.5 109 50.5
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 5.7e-20 103.6 299 36.1
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 3.1e-18 97.8 111 55.0
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.0e-18 96.7 53 73.6
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.6e-17 95.5 62 69.4
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 5.9e-17 93.6 56 80.4
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 5.6e-15 87.0 92 54.3
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-14 85.5 54 66.7
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-14 85.5 54 66.7
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-14 85.5 54 66.7
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-14 85.5 54 66.7
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-14 85.5 54 66.7
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-14 85.5 54 66.7
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-14 85.5 54 66.7
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-14 84.3 54 64.8
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 4.7e-14 84.0 47 85.1
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 4.7e-14 84.0 47 85.1
arahy.Tifrunner.gnm1.ann1.JYS69T Arachis hypogaea HOM05D003406 ORTHO05D004026 5.2e-13 80.5 67 62.7
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 6.8e-13 80.1 44 93.2
Aqoxy2G01592 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.7e-11 74.3 109 45.9
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.9e-11 73.9 77 59.7
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 3.2e-10 71.2 143 30.8
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-10 71.2 76 59.2
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 2.3e-08 65.1 61 47.5
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 3.0e-08 64.7 39 76.9
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-08 64.7 35 77.1
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.1e-07 62.8 36 91.7
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 2.5e-07 61.6 36 88.9
PSO063G4288 Papaver somniferum HOM05D002729 ORTHO05D305335 6.2e-06 57.0 97 42.3


User provided reference genes

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