Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 1.1e-36 156.0 75 100.0
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.0e-13 79.7 44 84.1
Cfa010451 Carpinus fangiana HOM05D006543 ORTHO05D008308 1.2e-12 76.3 81 56.8
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 1.7e-11 72.4 44 77.3
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 2.2e-11 72.0 44 77.3
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 2.2e-11 72.0 44 77.3
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 2.8e-11 71.6 44 77.3
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 8.3e-11 70.1 44 75.0
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 8.3e-11 70.1 44 75.0
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 8.3e-11 70.1 44 75.0
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 8.3e-11 70.1 44 75.0
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 1.1e-10 69.7 44 72.7
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 1.1e-10 69.7 44 72.7
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 1.1e-10 69.7 44 75.0
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 1.4e-10 69.3 44 75.0
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.4e-10 69.3 44 75.0
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 1.8e-10 68.9 44 72.7
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 2.4e-10 68.6 44 75.0
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 2.4e-10 68.6 44 72.7
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 3.1e-10 68.2 44 70.5
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 3.1e-10 68.2 44 75.0
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 3.1e-10 68.2 44 70.5
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 4.1e-10 67.8 44 70.5
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 5.3e-10 67.4 44 72.7
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 5.3e-10 67.4 44 72.7
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 5.3e-10 67.4 44 70.5
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 7.0e-10 67.0 44 70.5
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 7.0e-10 67.0 44 72.7
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 7.0e-10 67.0 44 70.5
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 9.1e-10 66.6 44 70.5
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 9.1e-10 66.6 44 68.2
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 9.1e-10 66.6 44 70.5
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 1.2e-09 66.2 44 70.5
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 1.2e-09 66.2 44 68.2
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 1.6e-09 65.9 67 55.2
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 2.0e-09 65.5 44 72.7
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.0e-09 65.5 44 70.5
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 2.0e-09 65.5 44 68.2
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 2.0e-09 65.5 44 65.9
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 2.7e-09 65.1 44 68.2
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 3.5e-09 64.7 44 68.2
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 3.5e-09 64.7 44 65.9
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 4.5e-09 64.3 44 65.9
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 5.9e-09 63.9 44 65.9
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 5.9e-09 63.9 44 68.2
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 7.7e-09 63.5 44 70.5
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 7.7e-09 63.5 44 65.9
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 7.7e-09 63.5 44 65.9
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 7.7e-09 63.5 44 65.9
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 7.7e-09 63.5 44 65.9
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 1.0e-08 63.2 44 65.9
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 1.0e-08 63.2 44 68.2
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 1.3e-08 62.8 44 63.6
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.7e-08 62.4 44 63.6
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 1.7e-08 62.4 44 68.2
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 2.2e-08 62.0 44 61.4
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 2.9e-08 61.6 44 65.9
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 2.9e-08 61.6 44 63.6
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 2.9e-08 61.6 44 63.6
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 2.9e-08 61.6 44 61.4
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 2.9e-08 61.6 44 68.2
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 3.8e-08 61.2 44 59.1
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 5.0e-08 60.8 44 65.9
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 6.5e-08 60.5 44 61.4
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 6.5e-08 60.5 44 61.4
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 6.5e-08 60.5 44 61.4
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 6.5e-08 60.5 44 63.6
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 8.5e-08 60.1 44 63.6
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 8.5e-08 60.1 44 63.6
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 1.1e-07 59.7 44 59.1
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.1e-07 59.7 44 59.1
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 1.1e-07 59.7 44 59.1
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 1.1e-07 59.7 44 59.1
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.1e-07 59.7 44 63.6
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 1.1e-07 59.7 44 63.6
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.5e-07 59.3 44 59.1
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.5e-07 59.3 44 59.1
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 1.5e-07 59.3 44 63.6
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 1.5e-07 59.3 44 63.6
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.9e-07 58.9 44 61.4
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.9e-07 58.9 44 61.4
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 2.5e-07 58.5 44 61.4
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 2.5e-07 58.5 44 61.4
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 3.2e-07 58.2 44 59.1
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 3.2e-07 58.2 44 59.1
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 4.2e-07 57.8 44 61.4
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 4.2e-07 57.8 44 61.4
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 5.5e-07 57.4 44 61.4
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 9.4e-07 56.6 44 63.6
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 3.6e-06 54.7 40 62.5
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 6.1e-06 53.9 32 71.9
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 8.0e-06 53.5 35 62.9
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 8.0e-06 53.5 44 59.1


User provided reference genes

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