Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009551 Carpinus fangiana HOM05D005410 ORTHO05D007394 2.0e-53 212.2 109 100.0
Haze_22935 Corylus avellana HOM05D005410 ORTHO05D007394 9.1e-27 123.6 70 91.4
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 8.6e-25 117.1 70 87.1
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 1.5e-24 116.3 70 84.3
Dinv13479 Davidia involucrata HOM05D005410 ORTHO05D007394 2.5e-24 115.5 70 84.3
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 4.2e-24 114.8 70 84.3
CSS0020515 Camellia sinensis var. sinensis HOM05D005410 ORTHO05D007394 5.5e-24 114.4 70 82.9
Thecc.09G203200 Theobroma cacao HOM05D005410 ORTHO05D007394 9.5e-24 113.6 70 80.0
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 1.2e-23 113.2 70 80.0
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 1.2e-23 113.2 70 82.9
CiPaw.13G177700 Carya illinoinensis HOM05D005410 ORTHO05D007394 1.6e-23 112.8 70 81.4
Sc09g0000010 Simmondsia chinensis HOM05D005410 ORTHO05D007394 1.6e-23 112.8 70 82.9
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 2.1e-23 112.5 70 80.0
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 3.6e-23 111.7 70 81.4
MBI05_g04454_MAGBIO Magnolia biondii HOM05D005410 ORTHO05D007394 3.6e-23 111.7 74 74.3
QL01p010651 Quercus lobata HOM05D005410 ORTHO05D007394 3.6e-23 111.7 69 82.6
EL10Ac4g10389 Beta vulgaris HOM05D005410 ORTHO05D007394 4.7e-23 111.3 97 62.9
CiPaw.14G137400 Carya illinoinensis HOM05D005410 ORTHO05D007394 6.1e-23 110.9 70 80.0
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 6.1e-23 110.9 70 80.0
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 6.1e-23 110.9 70 80.0
Eucgr.J01758 Eucalyptus grandis HOM05D005410 ORTHO05D007394 8.0e-23 110.5 70 84.3
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 8.0e-23 110.5 70 80.0
Oeu023977.1 Olea europaea HOM05D005410 ORTHO05D007394 8.0e-23 110.5 70 77.1
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 1.0e-22 110.2 70 78.6
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 1.0e-22 110.2 70 78.6
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 1.8e-22 109.4 70 78.6
Hund13622 Selenicereus undatus HOM05D005410 ORTHO05D007394 1.8e-22 109.4 70 77.1
Cpa.g.sc119.36 Carica papaya HOM05D005410 ORTHO05D007394 2.3e-22 109.0 70 81.4
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 3.0e-22 108.6 70 82.9
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 3.0e-22 108.6 70 82.9
FAN16G2022 Fragaria x ananassa HOM05D005410 ORTHO05D007394 4.0e-22 108.2 70 82.9
FAN25G1403 Fragaria x ananassa HOM05D005410 ORTHO05D007394 4.0e-22 108.2 70 82.9
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 5.2e-22 107.8 70 77.1
Ciclev10018072m.g Citrus clementina HOM05D005410 ORTHO05D007394 5.2e-22 107.8 70 77.1
DCAR_023818 Daucus carota HOM05D005410 ORTHO05D007394 5.2e-22 107.8 70 84.3
CAN.G1834.14 Capsicum annuum HOM05D005410 ORTHO05D007394 6.8e-22 107.5 70 78.6
Oeu060891.1 Olea europaea HOM05D005410 ORTHO05D007394 6.8e-22 107.5 70 77.1
CANSAT11G0129 Cannabis sativa HOM05D005410 ORTHO05D007394 8.9e-22 107.1 70 77.1
Manes.15G110100 Manihot esculenta HOM05D005410 ORTHO05D007394 8.9e-22 107.1 70 77.1
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 8.9e-22 107.1 70 80.0
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 1.2e-21 106.7 70 82.9
Sopen01g001540 Solanum pennellii HOM05D005410 ORTHO05D007394 1.2e-21 106.7 70 77.1
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 1.2e-21 106.7 70 77.1
Oeu023974.1 Olea europaea HOM05D005410 ORTHO05D007394 1.5e-21 106.3 70 74.3
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 1.5e-21 106.3 70 77.1
TAR623G0245 Trochodendron aralioides HOM05D005410 ORTHO05D007394 1.5e-21 106.3 70 80.0
GSVIVG01025488001 Vitis vinifera HOM05D005410 ORTHO05D007394 1.5e-21 106.3 70 77.1
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 2.0e-21 105.9 70 80.0
AUR62032839 Chenopodium quinoa HOM05D005410 ORTHO05D007394 2.0e-21 105.9 70 80.0
HPP92_001905 Vanilla planifolia HOM05D005410 ORTHO05D007394 2.0e-21 105.9 70 74.3
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 2.6e-21 105.5 70 81.4
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 2.6e-21 105.5 70 78.6
vmacro17045 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 2.6e-21 105.5 70 78.6
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 3.4e-21 105.1 70 77.1
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 3.4e-21 105.1 70 78.6
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 3.4e-21 105.1 70 75.7
FvH4_3g45781 Fragaria vesca HOM05D005410 ORTHO05D007394 4.4e-21 104.8 70 80.0
FAN11G0543 Fragaria x ananassa HOM05D005410 ORTHO05D007394 4.4e-21 104.8 70 80.0
FAN11G0605 Fragaria x ananassa HOM05D005410 ORTHO05D007394 4.4e-21 104.8 70 80.0
Nitab4.5_0000551g0050 Nicotiana tabacum HOM05D005410 ORTHO05D007394 4.4e-21 104.8 70 77.1
Nitab4.5_0006195g0040 Nicotiana tabacum HOM05D005410 ORTHO05D007394 4.4e-21 104.8 70 77.1
PSO339G0242 Papaver somniferum HOM05D005410 ORTHO05D007394 5.7e-21 104.4 70 72.9
PSO384G0864 Papaver somniferum HOM05D005410 ORTHO05D007394 5.7e-21 104.4 70 72.9
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 9.8e-21 103.6 70 80.0
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 1.3e-20 103.2 70 80.0
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 1.3e-20 103.2 70 80.0
SGA_v2.0_scaffold3G01679 Striga asiatica HOM05D005410 ORTHO05D007394 1.3e-20 103.2 70 74.3
unitig_0.g1148 Utricularia gibba HOM05D005410 ORTHO05D007394 1.3e-20 103.2 69 76.8
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 1.3e-20 103.2 70 80.0
Potri.003G222200 Populus trichocarpa HOM05D005410 ORTHO05D007394 1.7e-20 102.8 70 75.7
arahy.Tifrunner.gnm1.ann1.63K8WX Arachis hypogaea HOM05D005410 ORTHO05D007394 3.7e-20 101.7 70 78.6
arahy.Tifrunner.gnm1.ann1.GYZC8Z Arachis hypogaea HOM05D005410 ORTHO05D007394 3.7e-20 101.7 70 78.6
arahy.Tifrunner.gnm1.ann1.CQ6EI1 Arachis hypogaea HOM05D005410 ORTHO05D007394 4.9e-20 101.3 69 79.7
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 4.9e-20 101.3 64 76.6
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 4.9e-20 101.3 70 74.3
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 4.9e-20 101.3 70 74.3
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 6.3e-20 100.9 70 75.7
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 8.3e-20 100.5 64 76.6
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 8.3e-20 100.5 70 75.7
Potri.001G002700 Populus trichocarpa HOM05D005410 ORTHO05D007394 8.3e-20 100.5 70 75.7
Rhsim13G0233300 Rhododendron simsii HOM05D005410 ORTHO05D007394 8.3e-20 100.5 66 75.8
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 1.1e-19 100.1 64 78.1
ECA233G0964 Erigeron canadensis HOM05D005410 ORTHO05D007394 1.1e-19 100.1 70 74.3
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 1.1e-19 100.1 69 75.4
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 1.1e-19 100.1 70 77.1
Os07g0171100 Oryza sativa ssp. japonica HOM05D005410 ORTHO05D007394 1.1e-19 100.1 70 74.3
Peaxi162Scf00036g00221 Petunia axillaris HOM05D005410 ORTHO05D007394 1.1e-19 100.1 70 74.3
Sp1g41090 Schrenkiella parvula HOM05D005410 ORTHO05D007394 1.4e-19 99.8 70 72.9
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 1.4e-19 99.8 64 76.6
AL1G63500 Arabidopsis lyrata HOM05D005410 ORTHO05D007394 1.8e-19 99.4 70 74.3
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 1.8e-19 99.4 70 74.3
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 1.8e-19 99.4 70 72.9
BcaB02g10821 Brassica carinata HOM05D005410 ORTHO05D007394 2.4e-19 99.0 70 72.9
BcaC08g44199 Brassica carinata HOM05D005410 ORTHO05D007394 4.1e-19 98.2 70 72.9
A05p17460 Brassica napus HOM05D005410 ORTHO05D007394 4.1e-19 98.2 70 72.9
C06p16070 Brassica napus HOM05D005410 ORTHO05D007394 4.1e-19 98.2 70 72.9
BolC6t36806H Brassica oleracea HOM05D005410 ORTHO05D007394 4.1e-19 98.2 70 72.9
BraA05t20641Z Brassica rapa HOM05D005410 ORTHO05D007394 4.1e-19 98.2 70 72.9
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 4.1e-19 98.2 70 74.3
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 5.4e-19 97.8 68 70.6
Zm00001eb300990 Zea mays HOM05D005410 ORTHO05D007394 5.4e-19 97.8 67 71.6
CDE10G0059 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 1.6e-18 96.3 126 47.6
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 2.0e-18 95.9 64 73.4
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 2.0e-18 95.9 64 73.4
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 2.7e-18 95.5 70 71.4
SEGI_35670 Sequoiadendron giganteum HOM05D005410 ORTHO05D007394 1.1e-16 90.1 70 64.3
Mapoly0020s0152 Marchantia polymorpha HOM05D005410 ORTHO05D007394 1.5e-16 89.7 70 62.9
Psat7g062240 Pisum sativum HOM05D005410 ORTHO05D007394 4.7e-15 84.7 58 77.6
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 6.8e-14 80.9 68 55.9
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 6.8e-14 80.9 68 55.9
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 1.7e-12 76.3 69 50.7
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 2.2e-12 75.9 70 54.3
PRCOL_00004676 Prasinoderma coloniale HOM05D005410 ORTHO05D007394 3.0e-09 65.5 61 49.2
MCO13G101 Micromonas commoda HOM05D005410 ORTHO05D007394 5.6e-08 61.2 63 46.0
BcaB04g16956 Brassica carinata HOM05D005410 ORTHO05D009181 4.0e-06 55.1 39 61.5


User provided reference genes

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