Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 0.0e+00 1139.4 673 100.0
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 9.9e-281 969.9 633 83.9
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 2.1e-278 962.2 634 83.4
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 5.3e-258 894.4 673 78.0
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.7e-256 889.4 671 75.4
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.8e-256 888.3 614 81.4
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.1e-255 886.7 633 76.1
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.9e-255 885.9 673 76.4
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 5.5e-255 884.4 633 79.3
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.2e-254 883.2 673 77.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 3.5e-254 881.7 673 73.3
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 4.6e-254 881.3 673 76.8
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 8.7e-253 877.1 673 74.6
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 8.7e-253 877.1 673 71.9
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.5e-252 876.3 673 77.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.1e-250 870.2 673 74.9
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 5.3e-250 867.8 633 78.4
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.5e-249 866.3 673 73.3
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.0e-249 865.9 633 74.7
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.6e-249 865.5 629 74.6
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 4.5e-249 864.8 673 73.7
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 7.6e-249 864.0 673 73.7
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.0e-248 863.6 631 74.8
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 8.4e-248 860.5 686 71.9
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.4e-248 860.5 636 74.1
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.2e-247 858.6 677 74.3
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.2e-247 858.6 636 73.9
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 7.1e-247 857.4 673 74.3
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.6e-246 856.3 669 75.8
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 1.8e-245 852.8 633 73.6
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 3.0e-245 852.0 673 73.1
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 3.0e-245 852.0 632 72.9
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.1e-245 851.3 654 75.2
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 8.7e-245 850.5 675 71.0
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.9e-244 849.4 633 72.8
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.5e-244 849.0 669 76.1
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 7.4e-244 847.4 714 70.6
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.3e-243 846.7 630 76.2
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.8e-242 842.8 673 73.1
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 3.1e-242 842.0 673 70.4
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.3e-240 836.6 669 72.5
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.3e-240 836.6 673 71.6
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.2e-240 835.9 673 72.2
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 2.2e-240 835.9 680 73.1
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 5.5e-239 831.2 676 72.6
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 1.8e-237 826.2 634 71.5
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 2.5e-236 822.4 673 67.9
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 4.8e-235 818.1 631 72.3
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.4e-234 816.6 705 66.1
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 3.1e-234 815.5 674 71.5
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.5e-233 813.1 677 67.9
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.0e-232 810.4 677 68.2
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.9e-231 806.2 674 70.0
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 3.2e-231 805.4 642 69.6
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 3.2e-231 805.4 675 70.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.2e-231 805.4 675 70.8
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 3.2e-231 805.4 631 71.3
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 6.1e-230 801.2 675 71.3
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.8e-229 799.7 675 71.0
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.3e-229 799.3 654 71.4
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 5.1e-229 798.1 675 70.4
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 3.7e-227 792.0 673 66.6
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 4.8e-227 791.6 760 64.1
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 8.2e-227 790.8 675 69.9
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.1e-226 790.4 626 69.8
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.1e-226 788.9 683 67.3
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 9.1e-226 787.3 624 70.0
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.2e-225 786.9 676 67.8
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.7e-224 783.1 632 66.9
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.7e-224 783.1 670 65.1
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.2e-224 782.7 675 67.1
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 7.2e-223 777.7 676 67.6
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 7.2e-223 777.7 629 73.1
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 2.7e-222 775.8 674 64.5
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 4.7e-222 775.0 676 64.3
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 4.7e-222 775.0 676 64.3
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 4.7e-222 775.0 676 64.3
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 4.7e-222 775.0 703 64.0
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.3e-221 772.7 630 67.1
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 3.0e-221 772.3 675 64.3
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.9e-221 771.9 620 68.2
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.2e-219 766.1 685 62.9
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 4.8e-219 765.0 633 67.1
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.4e-218 762.7 626 68.8
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 5.3e-218 761.5 575 74.1
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 9.1e-218 760.8 631 69.7
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.0e-217 759.6 672 66.2
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 7.7e-217 757.7 633 66.0
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.3e-216 756.9 632 65.2
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.2e-214 750.4 674 63.1
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 6.8e-213 744.6 552 71.0
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 8.8e-213 744.2 631 69.6
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.8e-213 744.2 631 68.3
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.5e-212 743.4 624 65.7
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.2e-211 739.6 685 66.6
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 1.4e-210 736.9 678 61.8
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.2e-209 733.8 606 68.6
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 7.7e-209 731.1 632 65.5
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.5e-208 728.0 681 64.2
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.4e-205 720.3 636 65.4
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 5.7e-204 714.9 633 64.1
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.1e-202 710.7 527 73.6
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 7.0e-202 708.0 554 74.9
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 9.1e-202 707.6 676 63.9
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-198 697.2 626 64.9
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.0e-197 694.1 562 69.9
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.5e-196 690.3 639 61.7
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.3e-195 687.2 683 57.5
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.6e-185 653.7 646 59.0
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.0e-184 651.0 512 74.6
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.7e-184 650.2 610 62.1
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 2.9e-179 632.9 682 57.6
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 2.3e-176 623.2 674 56.2
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 7.3e-175 618.2 636 56.9
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.7e-171 607.1 507 70.0
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 4.1e-170 602.4 463 77.8
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.6e-169 599.0 475 69.3
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 5.6e-167 592.0 456 77.9
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 7.3e-167 591.7 511 64.0
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 2.7e-153 546.6 624 53.2
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.2e-146 523.1 457 70.9
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 6.0e-145 518.8 626 51.4
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 6.5e-139 498.8 628 45.7
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 4.2e-138 496.1 452 60.8
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 2.4e-133 480.3 555 51.7
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 2.4e-133 480.3 504 55.8
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 7.6e-132 475.3 649 44.4
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 5.0e-131 472.6 327 82.3
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 2.2e-118 430.6 389 60.9
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.8e-110 402.9 338 69.2
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 2.0e-108 397.5 589 43.3
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 8.5e-107 392.1 632 42.7
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.6e-105 387.9 421 53.2
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.8e-85 321.2 317 63.4
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 8.3e-70 269.2 212 68.4
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 2.0e-68 264.6 656 34.3
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 5.6e-66 256.5 224 60.3
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 3.6e-65 253.8 210 62.9
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 3.4e-63 247.3 325 51.1
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 2.9e-62 244.2 165 80.6
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.4e-61 240.0 167 76.0
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.7e-57 226.9 252 54.8
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 2.0e-55 221.5 713 30.2
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 3.4e-55 220.7 117 100.0
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.4e-54 216.1 188 63.8
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.3e-51 208.8 155 70.3
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 3.9e-51 207.2 155 69.7
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.1e-51 206.8 169 70.4
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.5e-50 205.3 179 62.6
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 2.1e-49 201.4 179 61.5
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.9e-48 196.4 152 69.7
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 2.2e-46 191.4 647 29.7
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 6.0e-44 183.3 128 75.8
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.9e-37 161.8 136 69.9
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.6e-36 158.7 148 62.2
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 6.2e-33 146.7 151 55.6
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 1.8e-32 145.2 189 47.1
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 7.6e-31 139.8 92 79.3
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 7.6e-31 139.8 92 79.3
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 7.6e-31 139.8 92 79.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 2.7e-28 131.3 111 61.3
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 4.3e-26 124.0 92 72.8
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.1e-24 119.4 97 64.9
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.5e-23 115.5 94 61.7
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.2e-20 105.9 97 55.7
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 7.9e-20 103.2 94 56.4
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.3e-19 101.7 91 64.8
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 5.7e-18 97.1 132 55.3
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.1e-16 92.8 78 62.8
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.2e-15 89.4 100 45.0
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.0e-15 88.6 120 50.0
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 1.0e-14 86.3 93 52.7
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 5.0e-14 84.0 61 65.6
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.9e-13 82.0 58 74.1
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 4.2e-13 80.9 82 51.2
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 6.1e-12 77.0 49 71.4
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 6.3e-09 67.0 48 75.0
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 6.3e-09 67.0 49 67.3
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.8e-08 65.5 644 24.1
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 1.5e-07 62.4 47 61.7
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.0e-07 62.0 164 34.1
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 2.0e-07 62.0 47 59.6
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 2.2e-06 58.5 50 56.0


User provided reference genes

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