Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 3.6e-98 361.7 199 100.0
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 7.9e-85 317.4 201 92.5
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.2e-77 293.5 202 82.2
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 5.7e-75 284.6 203 79.8
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 7.4e-75 284.3 202 78.7
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.6e-74 283.1 202 78.2
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 1.6e-74 283.1 202 78.2
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 5.9e-72 274.6 203 77.8
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 5.0e-71 271.6 202 78.7
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.4e-70 270.0 202 76.2
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.2e-69 266.9 202 76.2
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 2.7e-69 265.8 203 75.4
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 5.1e-68 261.5 205 76.6
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 6.7e-68 261.2 198 78.3
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 8.7e-68 260.8 202 75.7
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.1e-67 260.4 202 75.2
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 1.5e-67 260.0 203 74.4
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.9e-67 259.6 200 77.0
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 2.5e-67 259.2 203 75.9
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 7.4e-67 257.7 202 77.7
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 9.7e-67 257.3 199 76.9
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 9.7e-67 257.3 197 76.1
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.8e-66 255.0 203 73.4
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.4e-65 253.4 203 74.9
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 1.4e-65 253.4 202 72.3
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 1.8e-65 253.1 203 74.4
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 2.4e-65 252.7 199 74.9
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 3.1e-65 252.3 195 72.3
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 4.1e-65 251.9 199 70.9
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 4.1e-65 251.9 200 73.5
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 5.3e-65 251.5 202 72.8
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 2.6e-64 249.2 203 72.9
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 5.9e-64 248.1 197 74.1
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 7.7e-64 247.7 204 73.0
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 6.5e-63 244.6 198 72.7
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 8.5e-63 244.2 203 71.4
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.1e-62 243.8 199 72.9
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.4e-62 243.4 199 74.4
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 1.4e-62 243.4 201 73.6
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 3.2e-62 242.3 206 71.4
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 4.2e-62 241.9 210 69.0
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 9.4e-62 240.7 195 73.8
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 9.4e-62 240.7 200 70.5
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 1.2e-61 240.4 195 72.3
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 1.2e-61 240.4 204 71.1
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 2.1e-61 239.6 200 72.0
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 2.7e-61 239.2 196 72.4
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 3.6e-61 238.8 206 71.4
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.3e-60 236.1 205 65.4
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 3.9e-60 235.3 207 69.6
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 6.7e-60 234.6 204 71.1
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.1e-59 233.8 202 71.8
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 2.0e-59 233.0 211 71.1
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 2.6e-59 232.6 212 72.2
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 3.3e-59 232.3 202 73.3
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.3e-58 230.3 171 78.9
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.3e-58 230.3 199 68.8
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 2.8e-58 229.2 202 68.8
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 2.8e-58 229.2 197 67.0
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 4.8e-58 228.4 208 68.3
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.4e-57 226.9 201 69.2
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.1e-57 225.3 207 67.6
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 4.1e-57 225.3 205 67.3
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.3e-57 224.9 207 67.1
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 9.1e-57 224.2 208 66.8
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 9.1e-57 224.2 208 66.8
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-56 223.8 207 66.7
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-56 223.8 207 66.7
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 1.2e-56 223.8 205 67.8
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 7.7e-56 221.1 206 64.6
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.3e-55 220.3 201 64.2
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 1.7e-55 219.9 199 67.8
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 1.7e-55 219.9 210 66.2
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 2.9e-55 219.2 210 66.2
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 5.0e-55 218.4 208 65.9
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 5.0e-55 218.4 201 66.2
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.9e-54 216.5 209 65.1
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 4.2e-54 215.3 197 66.5
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 4.2e-54 215.3 198 64.1
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.2e-54 215.3 201 65.7
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.2e-53 213.8 201 65.2
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 1.2e-53 213.8 201 64.7
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 1.6e-53 213.4 204 64.2
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 6.1e-53 211.5 201 65.2
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 1.0e-52 210.7 200 65.5
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.8e-52 209.9 204 66.2
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.0e-52 209.1 206 64.6
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 3.0e-52 209.1 207 63.8
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 8.8e-52 207.6 198 65.2
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 1.1e-51 207.2 215 60.9
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 2.0e-51 206.5 194 65.5
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 5.7e-51 204.9 204 62.3
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 6.3e-50 201.4 195 63.1
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.1e-49 200.7 202 60.9
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.4e-49 200.3 206 61.2
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 1.4e-49 200.3 207 61.8
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 9.1e-49 197.6 200 61.0
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 2.0e-48 196.4 209 60.3
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 2.0e-48 196.4 211 59.7
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 2.6e-48 196.1 205 59.5
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 2.6e-48 196.1 200 59.5
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 4.5e-48 195.3 200 61.0
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.0e-47 194.1 199 58.3
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 1.3e-47 193.7 209 59.3
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 1.3e-47 193.7 209 59.3
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 1.3e-47 193.7 209 59.3
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.7e-47 193.4 200 60.0
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.7e-47 193.4 209 58.9
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 1.7e-47 193.4 201 62.2
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 5.0e-47 191.8 206 58.3
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 5.0e-47 191.8 206 58.3
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 1.1e-46 190.7 212 57.1
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 3.2e-46 189.1 208 57.7
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 3.2e-46 189.1 208 57.7
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 9.4e-46 187.6 207 59.4
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 9.4e-46 187.6 202 59.4
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 2.1e-45 186.4 216 56.5
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 1.4e-44 183.7 192 57.8
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 2.3e-44 183.0 213 58.7
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 3.0e-44 182.6 199 57.8
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.0e-44 182.6 201 59.2
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 6.7e-44 181.4 207 58.9
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 6.7e-44 181.4 200 60.5
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 6.7e-44 181.4 200 57.0
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 2.0e-43 179.9 207 58.5
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 2.2e-42 176.4 207 57.5
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 1.4e-41 173.7 207 56.0
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 1.4e-41 173.7 205 57.1
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 5.3e-41 171.8 200 55.0
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.0e-40 169.9 199 54.3
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 3.5e-40 169.1 204 55.4
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 8.5e-39 164.5 201 48.8
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 5.5e-38 161.8 179 62.0
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 4.7e-37 158.7 200 51.0
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 4.0e-36 155.6 204 51.0
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.5e-35 153.7 204 51.0
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 3.4e-35 152.5 180 55.6
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 7.5e-35 151.4 204 50.5
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.4e-33 146.4 141 53.2
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 7.0e-33 144.8 139 53.2
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 1.2e-32 144.1 113 67.3
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.2e-32 144.1 203 45.8
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.7e-32 142.9 167 50.9
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 2.9e-31 139.4 139 52.5
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.0e-28 129.4 123 67.5
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 2.4e-25 119.8 160 45.6
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 6.6e-23 111.7 149 57.0
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.6e-21 105.9 177 45.2
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 1.4e-20 104.0 77 68.8
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.8e-20 103.6 131 52.7
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 2.6e-19 99.8 115 53.0
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 4.4e-19 99.0 132 47.7
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 4.4e-19 99.0 200 39.0
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 1.3e-18 97.4 138 47.1
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.2e-18 96.7 132 47.7
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 8.3e-18 94.7 142 47.9
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.1e-17 92.4 60 76.7
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 2.5e-14 83.2 122 43.4
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 1.8e-12 77.0 86 60.5
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 1.7e-07 60.5 116 35.3
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 6.6e-07 58.5 179 27.9


User provided reference genes

Program Settings