Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 9.6e-231 803.1 403 100.0
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 9.5e-154 547.4 318 87.1
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 8.3e-134 481.1 437 62.9
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 9.3e-117 424.5 355 62.8
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 3.9e-115 419.1 357 63.3
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 1.1e-114 417.5 349 63.3
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 5.6e-114 415.2 360 59.7
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 7.3e-114 414.8 356 61.0
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 2.1e-113 413.3 354 59.6
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 4.0e-112 409.1 359 59.9
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 1.3e-110 404.1 337 60.8
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 1.3e-107 394.0 359 58.5
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 2.8e-105 386.3 358 56.4
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 8.1e-105 384.8 409 54.8
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 2.6e-103 379.8 344 57.6
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 2.2e-102 376.7 350 58.3
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 7.1e-101 371.7 352 56.0
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 6.0e-100 368.6 438 50.7
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 1.3e-99 367.5 357 56.6
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 1.3e-99 367.5 349 56.2
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 1.8e-99 367.1 356 55.9
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 3.9e-99 365.9 450 49.6
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 1.1e-98 364.4 350 54.9
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 8.2e-97 358.2 344 55.5
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 3.4e-95 352.8 326 56.4
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 1.2e-92 344.4 352 53.4
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 4.6e-92 342.4 369 50.9
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 6.0e-92 342.0 351 53.6
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 5.1e-91 339.0 354 50.8
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 7.4e-90 335.1 352 51.1
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 9.7e-90 334.7 356 53.4
CiPaw.05G152600 Carya illinoinensis HOM05D006564 ORTHO05D007772 1.8e-88 330.5 254 68.5
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 9.3e-85 318.2 360 49.4
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 4.6e-84 315.8 347 49.9
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 3.0e-83 313.2 320 53.8
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 3.3e-82 309.7 330 50.0
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 7.4e-82 308.5 345 47.8
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 7.4e-82 308.5 357 49.0
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 1.3e-81 307.8 411 43.8
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 1.7e-81 307.4 346 48.3
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 3.7e-81 306.2 345 47.2
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 1.1e-80 304.7 330 48.8
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 1.5e-79 300.8 374 44.7
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 1.0e-78 298.1 284 56.7
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 2.9e-78 296.6 363 46.3
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 6.5e-78 295.4 346 47.1
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 1.1e-77 294.7 346 45.4
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 1.9e-77 293.9 346 46.8
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 4.2e-77 292.7 351 46.2
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 7.2e-77 292.0 337 47.2
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 2.1e-76 290.4 371 42.0
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 3.6e-76 289.7 347 47.0
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 4.7e-76 289.3 348 46.6
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 6.1e-76 288.9 357 45.7
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 2.0e-74 283.9 391 43.2
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 3.3e-74 283.1 328 47.6
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 6.3e-73 278.9 381 43.0
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 1.1e-72 278.1 374 44.4
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 3.4e-71 273.1 353 44.8
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 7.7e-71 271.9 364 45.3
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 2.9e-70 270.0 379 42.5
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 2.9e-70 270.0 260 52.7
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 5.5e-69 265.8 327 47.1
RcHm_v2.0_Chr4g0443691 Rosa chinensis HOM05D006564 ORTHO05D007772 7.2e-69 265.4 223 60.5
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 1.2e-68 264.6 325 48.0
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 3.6e-68 263.1 325 47.4
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 9.1e-64 248.4 217 60.4
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.2e-63 248.1 353 43.6
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 2.0e-63 247.3 207 58.9
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 3.5e-63 246.5 343 42.3
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 1.0e-62 245.0 324 44.1
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 5.0e-62 242.7 353 42.5
Oeu056406.1 Olea europaea HOM05D006564 ORTHO05D007772 2.3e-59 233.8 342 42.7
Actinidia01701 Actinidia chinensis HOM05D006564 ORTHO05D007772 7.5e-58 228.8 209 57.4
AUR62005394 Chenopodium quinoa HOM05D006564 ORTHO05D007772 1.0e-51 208.4 341 39.6
Glyma.02G035501 Glycine max HOM05D006564 ORTHO05D007772 1.0e-51 208.4 209 53.1
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 4.0e-51 206.5 341 39.6
Lalb_Chr05g0216821 Lupinus albus HOM05D006564 ORTHO05D007772 6.3e-49 199.1 205 50.2
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 2.4e-48 197.2 350 36.3
Lj3A1053G47 Lonicera japonica HOM05D006564 ORTHO05D007772 6.5e-46 189.1 180 52.2
Migut.E00617 Erythranthe guttata HOM05D006564 ORTHO05D007772 1.6e-44 184.5 209 46.4
Lj3A1053T43 Lonicera japonica HOM05D006564 ORTHO05D007772 1.3e-41 174.9 142 65.5
RcHm_v2.0_Chr4g0443681 Rosa chinensis HOM05D006564 ORTHO05D007772 2.4e-40 170.6 135 65.9
unitig_744.g23977 Utricularia gibba HOM05D006564 ORTHO05D007772 4.5e-39 166.4 334 35.0
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 1.3e-38 164.9 254 40.9
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 1.5e-37 161.4 353 33.1
TAR374G1125 Trochodendron aralioides HOM05D006564 ORTHO05D007772 1.9e-37 161.0 215 43.7
Lalb_Chr05g0216811 Lupinus albus HOM05D006564 ORTHO05D007772 9.5e-37 158.7 119 66.4
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.6e-36 157.9 191 48.2
FAN22G1362 Fragaria x ananassa HOM05D006564 ORTHO05D007772 4.0e-35 153.3 135 60.7
FAN12G0482 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.4e-32 144.8 133 57.9
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 2.4e-32 144.1 209 39.2
ATR1091G047 Amborella trichopoda HOM05D006564 ORTHO05D007772 6.0e-31 139.4 156 48.7
Eucgr.H02586 Eucalyptus grandis HOM05D006564 ORTHO05D007772 1.7e-30 137.9 118 61.9
Actinidia01700 Actinidia chinensis HOM05D006564 ORTHO05D007772 8.6e-30 135.6 145 53.8
HanXRQChr12g0383581 Helianthus annuus HOM05D006564 ORTHO05D007772 4.3e-29 133.3 173 41.6
ClCG08G018020 Citrullus lanatus HOM05D006564 ORTHO05D007772 2.6e-26 124.0 138 50.0
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.7e-17 94.7 282 25.5
CDE06G0043 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 2.1e-15 87.8 137 42.3
SEGI_36736 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 7.8e-15 85.9 120 35.0
SHI17558 Sapria himalayana HOM05D006564 ORTHO05D007772 5.1e-14 83.2 90 50.0
Ca_03152_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 8.6e-14 82.4 72 55.6
SHI17547 Sapria himalayana HOM05D006564 ORTHO05D007772 8.6e-14 82.4 63 58.7
FvH4_4g34180 Fragaria vesca HOM05D006564 ORTHO05D007772 3.8e-09 67.0 135 38.5
AagrBONN_evm.TU.Sc2ySwM_362.2494 Anthoceros agrestis HOM05D006564 ORTHO05D007772 4.1e-08 63.5 316 23.4
HPP92_021828 Vanilla planifolia HOM05D006564 ORTHO05D007772 4.1e-08 63.5 92 37.0
CBR_g8804 Chara braunii HOM05D006564 ORTHO05D007772 6.0e-07 59.7 114 26.3
Pp3c7_26620 Physcomitrium patens HOM05D006564 ORTHO05D007772 7.8e-07 59.3 214 22.4


User provided reference genes

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