Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.7e-84 315.8 148 100.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 4.2e-51 204.9 129 75.2
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 6.8e-49 197.6 131 72.5
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 2.1e-21 106.3 154 43.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 4.6e-21 105.1 154 42.9
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 4.3e-19 98.6 133 41.4
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 4.3e-19 98.6 124 42.7
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 2.1e-18 96.3 135 40.7
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.1e-18 96.3 131 42.0
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 3.6e-18 95.5 126 42.9
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 3.6e-18 95.5 118 44.1
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 6.2e-18 94.7 129 42.6
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 6.2e-18 94.7 129 42.6
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.1e-17 94.0 129 42.6
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.8e-17 93.2 129 41.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 4.0e-17 92.0 118 42.4
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.2e-16 90.5 120 41.7
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.5e-16 90.1 125 40.0
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.6e-16 89.4 133 40.6
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.6e-16 89.4 125 40.0
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 2.6e-16 89.4 134 41.8
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 9.9e-16 87.4 128 39.8
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 9.9e-16 87.4 128 40.6
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 8.3e-15 84.3 137 39.4
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.1e-14 84.0 132 40.2
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.4e-14 83.6 124 36.3
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 4.1e-14 82.0 136 36.0
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 4.1e-14 82.0 120 40.8
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 5.4e-14 81.6 139 34.5
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 7.1e-14 81.3 125 38.4
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 7.1e-14 81.3 124 40.3
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 1.2e-13 80.5 136 39.7
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.6e-13 80.1 121 41.3
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.6e-13 80.1 122 41.8
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.7e-13 79.3 134 38.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 4.6e-13 78.6 125 38.4
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.9e-12 75.5 99 42.4
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 6.6e-12 74.7 129 38.8
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 8.6e-12 74.3 122 36.1
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.1e-11 73.9 119 37.8
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.9e-11 73.2 131 36.6
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.3e-11 72.4 113 34.5
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 5.6e-11 71.6 113 40.7
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 5.6e-11 71.6 125 36.8
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 7.3e-11 71.2 113 40.7
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 7.3e-11 71.2 125 36.8
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.2e-10 70.5 113 40.7
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 3.6e-10 68.9 126 34.9
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 4.7e-10 68.6 130 38.5
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.1e-09 67.4 126 34.9
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.8e-09 66.6 126 34.9
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.1e-09 65.9 128 35.9
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.0e-09 65.5 116 35.3
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 6.8e-09 64.7 58 50.0
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 6.8e-09 64.7 122 32.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.9e-09 64.3 119 36.1
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.5e-08 63.5 105 38.1
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.5e-08 63.5 116 34.5
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 3.4e-08 62.4 114 36.8
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 4.4e-08 62.0 114 36.0
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 7.6e-08 61.2 127 32.3
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 9.9e-08 60.8 68 41.2
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.3e-07 60.5 66 42.4
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 2.2e-07 59.7 119 36.1
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.2e-07 59.7 119 36.1
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.9e-07 59.3 117 33.3
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 3.8e-07 58.9 123 29.3
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.4e-06 57.0 122 29.5
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.9e-06 56.6 120 34.2
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.9e-06 56.6 118 33.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.2e-06 55.8 112 33.9
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 3.2e-06 55.8 114 33.3
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 4.2e-06 55.5 127 33.1
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 4.2e-06 55.5 121 34.7
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 5.4e-06 55.1 114 32.5
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 7.1e-06 54.7 109 33.9
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 7.1e-06 54.7 65 40.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 9.2e-06 54.3 121 33.1


User provided reference genes

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