Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 3.4e-96 355.1 196 100.0
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 5.5e-91 337.8 196 95.9
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.0e-77 292.7 196 84.7
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.8e-73 279.6 195 71.3
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.3e-68 263.5 195 70.3
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 2.3e-68 262.7 195 66.7
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 8.6e-68 260.8 196 65.3
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.5e-67 260.0 206 61.7
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.9e-67 259.6 196 64.3
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.9e-67 259.6 196 65.8
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 7.3e-67 257.7 206 61.2
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.6e-66 256.5 206 61.7
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 2.1e-66 256.1 195 65.6
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.6e-66 255.4 197 65.5
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 6.2e-66 254.6 197 64.5
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.3e-65 252.7 197 66.0
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.2e-64 250.4 203 61.6
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 2.0e-64 249.6 195 63.6
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.0e-64 249.6 195 63.6
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.0e-64 249.6 195 63.6
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 7.5e-64 247.7 196 62.8
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 9.9e-64 247.3 196 64.8
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 9.9e-64 247.3 196 62.8
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.3e-63 246.9 195 64.1
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.3e-63 246.9 195 64.1
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.7e-63 246.5 195 63.6
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.9e-63 245.7 196 62.2
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.9e-63 245.7 202 59.4
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 5.4e-62 241.5 196 62.2
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 9.2e-62 240.7 200 58.5
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.7e-60 236.5 200 60.0
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.7e-60 236.5 196 60.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.3e-60 236.1 191 59.2
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.1e-59 233.8 137 75.9
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.5e-59 233.4 196 68.4
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 3.3e-59 232.3 196 58.7
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 9.5e-59 230.7 196 57.7
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.2e-58 230.3 197 59.9
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 3.6e-58 228.8 223 52.5
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.4e-57 226.9 223 52.0
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 2.4e-57 226.1 195 56.9
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 5.2e-57 224.9 192 58.9
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 1.2e-56 223.8 196 59.2
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.5e-56 223.4 195 55.4
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.0e-56 223.0 196 66.3
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.0e-56 223.0 195 59.0
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 5.8e-56 221.5 196 58.7
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 2.2e-55 219.5 194 56.2
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 4.9e-55 218.4 136 72.8
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.9e-54 216.5 126 77.0
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 2.4e-54 216.1 132 75.8
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 2.4e-54 216.1 130 75.4
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.1e-54 214.5 195 55.9
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 9.2e-54 214.2 195 55.9
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.2e-53 213.8 124 77.4
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.6e-53 213.4 119 80.7
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.1e-53 213.0 130 72.3
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 2.7e-53 212.6 196 55.1
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 2.7e-53 212.6 128 74.2
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 3.5e-53 212.2 134 70.9
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 4.6e-53 211.8 136 70.6
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 6.0e-53 211.5 195 55.4
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.3e-52 210.3 209 54.1
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.3e-52 210.3 195 53.3
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.7e-52 209.9 195 53.8
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 3.9e-52 208.8 195 53.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.6e-52 208.0 195 54.4
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.6e-52 208.0 195 54.4
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.9e-51 206.5 195 53.3
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.9e-51 206.5 121 81.0
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 4.3e-51 205.3 195 51.3
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 4.3e-51 205.3 195 51.3
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 5.6e-51 204.9 130 70.0
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 4.7e-50 201.8 113 79.6
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 4.7e-50 201.8 114 77.2
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.8e-49 199.9 179 54.2
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-48 196.8 181 53.6
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-48 196.8 181 53.6
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.5e-48 196.8 181 53.6
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.5e-48 196.8 181 53.6
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.0e-48 196.4 130 66.9
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.0e-48 196.4 195 52.8
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 3.4e-48 195.7 179 52.5
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 3.4e-48 195.7 183 53.0
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.4e-48 195.7 195 52.8
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.4e-48 195.3 195 51.8
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 7.6e-48 194.5 188 51.1
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 7.6e-48 194.5 181 53.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 7.6e-48 194.5 181 53.0
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.7e-47 193.4 191 52.9
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.7e-47 193.4 195 53.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.2e-47 193.0 195 53.3
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.4e-47 191.4 127 70.1
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.4e-46 190.3 125 66.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 1.4e-46 190.3 189 51.9
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 4.2e-46 188.7 131 67.2
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.2e-46 188.7 114 72.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 4.2e-46 188.7 192 49.5
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.2e-46 188.7 195 48.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 7.1e-46 188.0 192 49.5
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 9.3e-46 187.6 192 49.5
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.2e-45 187.2 136 65.4
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.2e-45 187.2 195 49.2
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 7.8e-45 184.5 181 51.9
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 1.0e-44 184.1 181 51.4
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.3e-44 183.7 125 68.0
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.7e-44 183.3 124 66.9
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.9e-44 182.2 191 48.7
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.9e-44 182.2 191 48.7
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.9e-44 182.2 191 48.7
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 3.9e-44 182.2 130 65.4
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 6.6e-44 181.4 194 49.5
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 8.7e-44 181.0 127 64.6
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.1e-43 180.6 195 50.8
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-43 180.3 191 48.2
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.5e-43 180.3 125 64.8
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 3.3e-43 179.1 124 65.3
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.3e-42 177.2 131 61.1
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 4.8e-42 175.3 197 45.7
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.4e-41 173.7 189 47.6
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.4e-41 172.9 205 46.8
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 4.0e-41 172.2 120 65.0
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.0e-40 169.9 127 60.6
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.0e-40 169.9 136 58.1
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.4e-40 169.1 124 62.9
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.5e-40 168.7 114 67.5
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.5e-40 168.7 114 66.7
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.2e-39 166.4 190 47.4
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.9e-39 166.0 120 60.8
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 8.4e-39 164.5 123 59.3
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.4e-39 164.5 114 63.2
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.4e-38 162.9 120 59.2
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.2e-37 160.6 121 61.2
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 6.0e-37 158.3 120 57.5
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 7.9e-37 157.9 120 57.5
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.0e-36 157.5 136 57.4
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 8.7e-36 154.5 122 54.9
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.1e-35 154.1 125 58.4
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.9e-35 153.3 127 58.3
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.8e-34 148.7 109 60.6
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 4.8e-34 148.7 132 51.5
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.8e-33 146.7 116 56.9
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 6.9e-33 144.8 123 52.8
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 9.0e-33 144.4 114 56.1
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.2e-31 139.8 110 63.6
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.4e-31 138.3 103 58.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 4.6e-29 132.1 109 57.8
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 8.7e-28 127.9 111 52.3
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.9e-27 126.7 95 57.9
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 4.3e-27 125.6 120 50.0
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 9.6e-27 124.4 112 50.9
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.3e-26 124.0 124 49.2
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.1e-25 120.9 89 60.7
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.4e-25 119.8 96 57.3
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.1e-25 119.4 84 59.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 6.9e-25 118.2 118 45.8
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 9.0e-25 117.9 120 44.2
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 3.4e-24 115.9 121 51.2
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 5.8e-24 115.2 121 47.1
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 5.8e-24 115.2 121 47.1
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.9e-23 112.8 107 51.4
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.4e-22 110.5 121 44.6
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-21 106.7 77 58.4
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.8e-20 103.6 57 78.9
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.9e-19 100.1 127 46.5
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.4e-19 98.2 73 60.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-17 94.4 68 55.9
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 4.5e-16 89.0 109 38.5
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 7.9e-13 78.2 122 36.9
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.5e-11 73.9 42 71.4
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 7.4e-11 71.6 44 70.5
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 2.8e-10 69.7 72 44.4


User provided reference genes

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