Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 0.0e+00 1201.0 607 100.0
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 0.0e+00 1112.8 607 93.6
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 5.6e-291 1003.8 607 82.7
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.9e-286 988.8 602 81.7
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 2.4e-278 961.8 605 79.8
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 2.4e-262 908.7 605 76.0
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 2.1e-261 905.6 599 76.0
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.7e-260 902.5 599 75.6
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.6e-258 896.0 602 74.6
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.1e-257 893.3 610 73.6
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.1e-257 893.3 605 74.4
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 2.0e-256 889.0 599 74.1
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 2.2e-255 885.6 602 73.6
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.3e-254 880.2 599 73.6
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 1.6e-253 879.4 606 73.8
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 7.4e-251 870.5 600 73.8
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 3.1e-249 865.1 605 71.7
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 5.3e-249 864.4 597 73.0
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.2e-248 863.2 607 72.5
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 2.6e-248 862.1 600 73.2
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 3.2e-246 855.1 620 70.3
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 1.3e-244 849.7 603 71.6
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 2.3e-244 849.0 600 70.7
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 3.0e-244 848.6 600 70.7
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 3.9e-244 848.2 604 71.2
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 3.9e-244 848.2 612 70.8
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 8.2e-242 840.5 607 71.3
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 2.0e-240 835.9 604 71.0
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 1.0e-239 833.6 622 68.6
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 2.2e-239 832.4 640 67.0
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.1e-238 830.1 609 69.8
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 9.3e-238 827.0 603 69.2
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.5e-237 825.1 632 67.6
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 6.0e-237 824.3 602 68.6
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 1.3e-236 823.2 611 69.2
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.1e-235 820.1 604 68.5
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.4e-233 812.4 604 68.0
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 3.1e-233 812.0 609 67.3
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 5.3e-233 811.2 598 68.2
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.0e-232 809.3 608 67.3
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 2.6e-232 808.9 601 67.7
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 5.9e-232 807.7 603 66.5
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 2.9e-231 805.4 604 67.2
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 6.5e-231 804.3 607 68.2
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.9e-230 802.7 541 75.0
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.5e-230 802.4 608 66.6
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 2.5e-230 802.4 604 66.7
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 2.5e-230 802.4 604 67.5
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 2.5e-230 802.4 604 67.4
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 7.2e-230 800.8 604 67.4
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 9.4e-230 800.4 601 67.1
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 3.6e-229 798.5 601 67.2
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 4.6e-229 798.1 607 67.4
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 7.9e-229 797.3 572 69.4
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 1.0e-228 797.0 602 67.3
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 1.8e-228 796.2 603 67.0
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.3e-228 795.8 602 66.9
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.3e-228 795.8 605 66.9
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.3e-228 795.8 603 67.5
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 5.1e-228 794.7 604 66.7
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 8.8e-228 793.9 597 66.8
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 1.1e-227 793.5 603 66.7
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.1e-227 793.5 603 67.0
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.9e-227 792.7 619 64.9
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.5e-227 792.3 602 65.8
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 3.3e-227 792.0 585 67.9
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 5.7e-227 791.2 604 65.9
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 7.4e-227 790.8 602 65.8
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 9.7e-227 790.4 605 66.8
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.7e-226 789.6 602 66.9
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 3.7e-226 788.5 602 65.6
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 4.8e-226 788.1 606 66.8
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 8.2e-226 787.3 602 66.1
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.1e-225 786.9 605 66.8
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 4.1e-225 785.0 604 67.4
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 4.1e-225 785.0 604 67.4
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 2.2e-223 779.2 607 66.4
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 2.9e-223 778.9 606 65.0
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 5.0e-223 778.1 617 64.3
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 5.5e-222 774.6 605 65.5
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 5.5e-222 774.6 607 66.1
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 9.4e-222 773.9 604 64.9
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 2.7e-221 772.3 603 66.2
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 4.7e-221 771.5 599 64.8
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 6.1e-221 771.2 604 64.7
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 8.8e-220 767.3 605 64.0
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 2.0e-219 766.1 608 65.0
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 4.8e-218 761.5 603 63.8
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 2.4e-217 759.2 608 63.2
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 7.0e-217 757.7 602 63.6
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 7.0e-217 757.7 584 65.2
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 7.0e-217 757.7 607 65.1
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.7e-215 753.1 609 63.2
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.8e-215 751.9 602 63.5
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 3.8e-215 751.9 599 65.1
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.4e-214 750.0 599 64.9
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.2e-214 748.8 603 63.8
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 2.1e-213 746.1 603 63.7
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.1e-213 746.1 603 63.7
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.2e-212 741.5 603 63.7
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 5.7e-211 738.0 611 63.3
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 7.4e-211 737.6 548 66.8
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.2e-210 736.1 603 63.0
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.8e-210 735.7 606 63.9
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 2.8e-210 735.7 607 63.4
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 6.3e-210 734.6 610 63.0
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.6e-208 729.2 620 61.5
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 5.9e-208 728.0 600 61.7
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 5.0e-207 724.9 597 63.7
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 7.2e-206 721.1 524 69.3
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 2.5e-198 696.0 607 61.6
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 4.2e-198 695.3 601 61.2
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 7.5e-195 684.5 602 59.3
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 2.8e-194 682.6 599 60.3
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.8e-193 679.9 608 58.2
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 1.2e-192 677.2 582 60.5
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 7.8e-184 647.9 600 55.7
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 2.1e-181 639.8 603 57.2
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 3.1e-172 609.4 607 55.4
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.5e-166 590.5 623 51.2
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.9e-166 590.1 471 65.0
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 9.5e-166 587.8 604 51.8
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.1e-164 584.3 595 51.8
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.1e-152 543.5 444 62.4
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 1.5e-147 527.3 606 48.0
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 3.3e-142 509.6 395 68.1
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 3.2e-137 493.0 603 46.8
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.7e-127 458.8 318 73.6
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 4.3e-126 456.1 515 48.2
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 7.1e-121 438.7 319 67.4
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 3.0e-119 433.3 459 49.5
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 4.3e-118 429.5 359 63.5
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 1.6e-117 427.6 632 40.7
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.8e-108 397.5 527 44.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.8e-106 389.8 355 60.0
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 8.8e-87 325.5 268 63.4
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 8.0e-80 302.4 452 39.8
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 7.2e-73 279.3 184 75.5
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 6.1e-72 276.2 220 65.5
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 8.3e-69 265.8 492 37.6
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 4.6e-67 260.0 225 58.2
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 2.9e-61 240.7 162 73.5
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.8e-59 232.6 136 77.2
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.8e-48 197.6 391 37.9
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.2e-40 172.2 119 68.9
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 3.1e-39 167.5 123 69.1
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.7e-35 154.5 115 65.2
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.5e-35 154.1 115 65.2
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.5e-33 148.7 184 50.5
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.6e-33 146.7 101 71.3
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.6e-33 146.0 101 71.3
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 4.8e-32 143.7 132 59.1
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 9.9e-30 136.0 80 76.2
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 1.7e-29 135.2 211 42.7
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 6.0e-27 126.7 82 74.4
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 3.9e-26 124.0 76 76.3
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 8.1e-24 116.3 182 45.1
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 8.4e-21 106.3 121 53.7
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 2.5e-17 94.7 60 70.0
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 2.5e-17 94.7 134 44.0
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 4.5e-14 84.0 65 61.5
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 3.8e-13 80.9 57 63.2
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 4.3e-09 67.4 41 75.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.1e-08 65.1 33 87.9
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 2.4e-07 61.6 150 32.0
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 2.0e-06 58.5 35 77.1


User provided reference genes

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