Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1668.7 871 100.0
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1359.4 880 79.7
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1344.3 876 80.3
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1325.8 904 77.2
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1318.9 908 77.2
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1318.9 896 78.0
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1315.1 824 82.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1310.4 901 77.6
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1309.3 885 78.2
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1307.7 907 76.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1306.2 907 76.8
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1302.3 909 76.3
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1298.1 908 74.1
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1295.8 886 78.2
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1295.4 818 81.8
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1293.9 872 77.3
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1293.5 824 81.1
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1290.8 883 77.2
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1283.1 892 77.2
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1281.9 886 76.5
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1279.2 886 75.8
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1278.1 892 76.5
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1277.3 824 79.0
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1276.9 848 79.4
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1271.9 884 75.6
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1271.9 870 76.1
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1270.8 880 76.4
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1269.6 829 79.1
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1268.8 870 75.9
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1268.1 886 75.1
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1268.1 882 76.0
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1267.7 884 75.6
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1267.3 829 79.0
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1266.5 824 78.5
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1266.5 824 78.8
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1263.4 884 74.5
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1263.1 872 75.8
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1260.7 886 76.2
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1260.0 882 74.7
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1258.8 879 75.9
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1256.9 817 79.9
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1255.4 878 74.5
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1248.0 879 75.3
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1247.6 879 74.2
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1241.1 892 73.2
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1238.4 899 72.1
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1236.5 877 74.9
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1236.1 892 73.0
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1235.7 886 73.4
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1233.0 829 77.0
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1230.3 902 73.4
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1229.9 862 75.5
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1227.2 889 72.7
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1219.9 829 74.8
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1218.8 900 70.0
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1218.0 870 72.9
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1215.3 899 71.0
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1214.9 898 70.4
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1214.1 871 72.1
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1213.7 894 70.5
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1212.2 872 71.9
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1212.2 861 74.9
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1211.4 838 73.7
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1207.2 877 72.5
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1196.0 814 75.7
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1192.2 876 71.7
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1188.3 904 69.9
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1187.9 814 75.3
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1182.9 832 74.5
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1178.7 865 71.8
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1174.1 880 71.8
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1173.3 846 74.5
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1168.7 899 68.7
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1166.4 900 69.9
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1161.7 890 70.0
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1159.4 883 71.1
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1138.3 815 70.4
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1133.2 823 72.7
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1122.5 859 67.5
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1118.6 811 69.2
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1103.2 830 68.2
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1096.3 821 69.7
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1079.7 803 69.2
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1079.7 803 69.2
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 5.0e-285 984.6 851 63.7
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 6.8e-258 894.4 620 76.6
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.8e-250 869.8 476 89.7
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.3e-245 853.6 551 80.2
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 7.3e-244 847.8 821 55.8
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 4.8e-243 845.1 630 71.9
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 2.4e-234 816.2 567 79.7
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 2.6e-233 812.8 500 80.6
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 6.7e-229 798.1 808 53.6
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 6.2e-219 765.0 518 77.4
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 1.0e-216 757.7 805 51.6
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.7e-203 712.6 502 77.3
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 2.6e-188 663.3 809 46.4
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 5.3e-186 655.6 810 44.7
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 4.7e-182 642.5 475 72.8
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.8e-166 590.1 465 69.9
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 3.1e-157 560.1 412 72.8
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 1.5e-143 514.6 834 37.5
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 7.8e-129 465.7 253 95.3
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 1.9e-127 461.1 353 73.7
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 1.3e-102 378.6 284 71.1
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 4.5e-100 370.2 305 68.5
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 4.5e-100 370.2 201 88.1
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 1.4e-98 365.2 209 88.0
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.1e-93 349.0 218 77.1
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 2.2e-91 341.3 245 73.5
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 9.4e-90 335.9 224 73.7
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.7e-89 334.3 253 69.2
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 8.2e-86 322.8 195 81.0
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 5.9e-84 316.6 202 83.2
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 4.5e-52 210.7 128 77.3
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.4e-47 194.5 111 84.7
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 6.4e-46 190.3 123 74.8
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 8.3e-46 189.9 152 67.1
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.7e-43 182.2 116 77.6
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 6.2e-41 173.7 131 67.9
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 8.0e-41 173.3 100 88.0
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 2.3e-40 171.8 100 88.0
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 6.0e-36 157.1 209 46.4
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.1e-34 152.9 79 91.1
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.4e-21 107.5 82 74.4
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.2e-20 106.3 167 40.1
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 3.5e-20 104.8 61 83.6
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.5e-20 104.8 87 62.1
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.4e-16 92.8 63 73.0
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.2e-15 89.7 59 79.7
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 9.9e-15 86.7 52 82.7
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.8e-14 84.7 62 67.7
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 8.4e-14 83.6 72 56.9
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 8.4e-14 83.6 72 56.9
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.4e-13 80.9 49 83.7
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 7.1e-13 80.5 49 81.6
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 2.1e-09 68.9 96 51.0
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 1.4e-08 66.2 49 71.4
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 1.8e-08 65.9 100 50.0
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 5.3e-08 64.3 249 22.5
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 5.3e-08 64.3 202 25.7
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 9.0e-08 63.5 228 25.4
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 1.5e-07 62.8 42 73.8
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 9.9e-07 60.1 38 71.1
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 6.4e-06 57.4 196 26.0
Hma1.2p1_0969F.1_g242594 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 6.4e-06 57.4 196 26.0


User provided reference genes

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