Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005306 Carpinus fangiana HOM05D001734 ORTHO05D023218 1.9e-50 202.2 103 100.0
Cfa005298 Carpinus fangiana HOM05D001734 ORTHO05D006943 1.5e-47 192.6 102 95.1
Haze_02089 Corylus avellana HOM05D001734 ORTHO05D006943 4.1e-45 184.5 102 93.1
QL11p052553 Quercus lobata HOM05D001734 ORTHO05D006943 2.6e-39 165.2 102 77.5
CiPaw.06G119600 Carya illinoinensis HOM05D001734 ORTHO05D006943 1.7e-38 162.5 102 78.4
TWI79G0733 Tripterygium wilfordii HOM05D001734 ORTHO05D006943 2.3e-32 142.1 102 66.7
Hma1.2p1_0032F.1_g019090 Hydrangea macrophylla HOM05D001734 ORTHO05D006943 1.5e-31 139.4 102 63.7
Actinidia18030 Actinidia chinensis HOM05D001734 ORTHO05D006943 2.7e-28 128.6 101 55.4
Dinv14134 Davidia involucrata HOM05D001734 ORTHO05D006943 1.3e-27 126.3 101 57.4
TAR628G1453 Trochodendron aralioides HOM05D001734 ORTHO05D006943 3.0e-27 125.2 102 57.8
CSS0001027 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 6.6e-27 124.0 101 56.4
CSS0020547 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 6.6e-27 124.0 101 56.4
Potri.004G179000 Populus trichocarpa HOM05D001734 ORTHO05D006943 8.6e-27 123.6 102 56.9
vmacro02297 Vaccinium macrocarpon HOM05D001734 ORTHO05D006943 8.6e-27 123.6 99 57.6
DCAR_022421 Daucus carota HOM05D001734 ORTHO05D006943 3.3e-26 121.7 101 56.4
GSVIVG01023964001 Vitis vinifera HOM05D001734 ORTHO05D006943 3.3e-26 121.7 95 60.0
FAN24G0945 Fragaria x ananassa HOM05D001734 ORTHO05D006943 4.3e-26 121.3 90 64.4
Nn6g31886 Nelumbo nucifera HOM05D001734 ORTHO05D006943 4.3e-26 121.3 102 53.9
FAN27G0836 Fragaria x ananassa HOM05D001734 ORTHO05D006943 7.3e-26 120.6 90 64.4
FAN15G3013 Fragaria x ananassa HOM05D001734 ORTHO05D006943 2.1e-25 119.0 90 63.3
FAN20G0548 Fragaria x ananassa HOM05D001734 ORTHO05D006943 2.1e-25 119.0 90 63.3
Lj5A175T98 Lonicera japonica HOM05D001734 ORTHO05D006943 2.1e-25 119.0 102 54.9
RcHm_v2.0_Chr6g0279121 Rosa chinensis HOM05D001734 ORTHO05D006943 2.1e-25 119.0 99 59.6
Duzib052G0295 Durio zibethinus HOM05D001734 ORTHO05D006943 3.6e-25 118.2 101 58.4
FvH4_2g15770 Fragaria vesca HOM05D001734 ORTHO05D006943 3.6e-25 118.2 90 63.3
Sabra04G0120500 Salix brachista HOM05D001734 ORTHO05D006943 4.7e-25 117.9 102 52.9
MBI18_g09841_MAGBIO Magnolia biondii HOM05D001734 ORTHO05D006943 6.2e-25 117.5 88 62.5
Manes.04G069900 Manihot esculenta HOM05D001734 ORTHO05D006943 6.2e-25 117.5 102 56.9
Lj5g0001935 Lotus japonicus HOM05D001734 ORTHO05D006943 1.1e-24 116.7 101 54.5
Thecc.02G053500 Theobroma cacao HOM05D001734 ORTHO05D006943 1.1e-24 116.7 101 55.4
Ciclev10027660m.g Citrus clementina HOM05D001734 ORTHO05D006943 1.8e-24 115.9 89 62.9
CANSAT25G2086 Cannabis sativa HOM05D001734 ORTHO05D006943 2.4e-24 115.5 101 55.4
Prupe.8G170300 Prunus persica HOM05D001734 ORTHO05D006943 5.2e-24 114.4 97 61.9
Rhsim11G0194400 Rhododendron simsii HOM05D001734 ORTHO05D006943 6.8e-24 114.0 101 49.5
Sed0017558 Sechium edule HOM05D001734 ORTHO05D006943 1.2e-23 113.2 93 58.1
Cc09_g10400 Coffea canephora HOM05D001734 ORTHO05D006943 1.5e-23 112.8 101 55.4
Gohir.D12G036700 Gossypium hirsutum HOM05D001734 ORTHO05D006943 3.4e-23 111.7 101 56.4
Medtr1g113830 Medicago truncatula HOM05D001734 ORTHO05D006943 3.4e-23 111.7 101 53.5
TPR.G2476 Trifolium pratense HOM05D001734 ORTHO05D006943 5.8e-23 110.9 101 51.5
MD05G1126600 Malus domestica HOM05D001734 ORTHO05D006943 7.6e-23 110.5 101 55.4
MELO3C013324.2 Cucumis melo HOM05D001734 ORTHO05D006943 9.9e-23 110.2 90 57.8
CsaV3_7G001280 Cucumis sativus L. HOM05D001734 ORTHO05D006943 1.3e-22 109.8 90 56.7
Gohir.A12G035900 Gossypium hirsutum HOM05D001734 ORTHO05D006943 1.3e-22 109.8 101 55.4
ClCG02G003850 Citrullus lanatus HOM05D001734 ORTHO05D006943 1.7e-22 109.4 90 60.0
Gorai.008G037900 Gossypium raimondii HOM05D001734 ORTHO05D006943 2.2e-22 109.0 101 55.4
TPR.G2452 Trifolium pratense HOM05D001734 ORTHO05D023218 2.9e-22 108.6 101 50.5
PSO210G4774 Papaver somniferum HOM05D001734 ORTHO05D006943 3.8e-22 108.2 101 57.4
Aqoxy5G01087 Aquilegia oxysepala HOM05D001734 ORTHO05D006943 6.4e-22 107.5 101 52.5
Lalb_Chr06g0163781 Lupinus albus HOM05D001734 ORTHO05D006943 8.4e-22 107.1 102 53.9
PSO170G1896 Papaver somniferum HOM05D001734 ORTHO05D006943 3.2e-21 105.1 101 57.4
Ca_03288_v3 Cicer arietinum L. HOM05D001734 ORTHO05D006943 4.2e-21 104.8 101 47.5
PGR142G2610 Punica granatum HOM05D001734 ORTHO05D006943 2.7e-20 102.1 102 53.9
Glyma.10G284200 Glycine max HOM05D001734 ORTHO05D006943 4.6e-20 101.3 87 56.3
arahy.Tifrunner.gnm1.ann1.M4HWYD Arachis hypogaea HOM05D001734 ORTHO05D006943 6.6e-19 97.4 87 49.4
VMungo0720G2261 Vigna mungo HOM05D001734 ORTHO05D006943 1.1e-18 96.7 84 56.0
Eucgr.I01462 Eucalyptus grandis HOM05D001734 ORTHO05D006943 1.9e-18 95.9 92 50.0
Nitab4.5_0004557g0050 Nicotiana tabacum HOM05D001734 ORTHO05D006943 9.6e-18 93.6 101 44.6
Phvul.007G016900 Phaseolus vulgaris HOM05D001734 ORTHO05D023218 1.3e-17 93.2 75 60.0
Migut.B00045 Erythranthe guttata HOM05D001734 ORTHO05D006943 2.8e-17 92.0 98 45.9
CAN.G588.109 Capsicum annuum HOM05D001734 ORTHO05D006943 3.6e-17 91.7 101 43.6
ECA234G4688 Erigeron canadensis HOM05D001734 ORTHO05D006943 4.8e-17 91.3 101 43.6
Nitab4.5_0004867g0090 Nicotiana tabacum HOM05D001734 ORTHO05D006943 1.1e-16 90.1 101 43.6
SGA_v2.0_scaffold32G13315 Striga asiatica HOM05D001734 ORTHO05D006943 1.1e-16 90.1 98 41.8
Ah.01g023340 Amaranthus hybridus HOM05D001734 ORTHO05D006943 2.4e-16 89.0 86 51.2
Sopen01g053910 Solanum pennellii HOM05D001734 ORTHO05D006943 2.6e-15 85.5 101 42.6
Aa31LG7G15750 Aethionema arabicum HOM05D001734 ORTHO05D006943 4.4e-15 84.7 97 40.2
Solyc01g111870.3 Solanum lycopersicum HOM05D001734 ORTHO05D006943 5.8e-15 84.3 101 41.6
AUR62010002 Chenopodium quinoa HOM05D001734 ORTHO05D006943 1.3e-14 83.2 94 44.7
AUR62012990 Chenopodium quinoa HOM05D001734 ORTHO05D006943 1.7e-14 82.8 98 44.9
A04p15830 Brassica napus HOM05D001734 ORTHO05D006943 2.2e-14 82.4 97 39.2
C04p50230 Brassica napus HOM05D001734 ORTHO05D006943 2.2e-14 82.4 97 39.2
BolC4t26623H Brassica oleracea HOM05D001734 ORTHO05D006943 2.2e-14 82.4 97 39.2
BraA04t17214Z Brassica rapa HOM05D000482 ORTHO05D006943 2.2e-14 82.4 97 39.2
Peaxi162Scf00362g00442 Petunia axillaris HOM05D001734 ORTHO05D006943 2.9e-14 82.0 101 43.6
Sc18g0006200 Simmondsia chinensis HOM05D001734 ORTHO05D006943 2.9e-14 82.0 97 45.4
EL10Ac9g21328 Beta vulgaris HOM05D001734 ORTHO05D006943 3.8e-14 81.6 78 50.0
Aa31LG7G14750 Aethionema arabicum HOM05D001734 ORTHO05D006943 6.4e-14 80.9 87 41.4
Lsat_1_v5_gn_3_6601 Lactuca sativa HOM05D001734 ORTHO05D006943 6.4e-14 80.9 101 41.6
Hund00010 Selenicereus undatus HOM05D001734 ORTHO05D006943 1.1e-13 80.1 91 44.0
Sp4g00080 Schrenkiella parvula HOM05D001734 ORTHO05D006943 2.4e-13 79.0 97 38.1
Atru.chr2.2183 Acer truncatum HOM05D001734 ORTHO05D023218 4.6e-12 74.7 53 73.6
Psat6g232760 Pisum sativum HOM05D001734 ORTHO05D006943 1.7e-11 72.8 72 47.2
Carub.0008s0072 Capsella rubella HOM05D001734 ORTHO05D006943 2.3e-11 72.4 98 36.7
HanXRQChr05g0141851 Helianthus annuus HOM05D001734 ORTHO05D006943 2.3e-11 72.4 102 35.3
CARHR115960 Cardamine hirsuta HOM05D001734 ORTHO05D006943 3.0e-11 72.0 97 35.1
Thhalv10027615m.g Eutrema salsugineum HOM05D001734 ORTHO05D006943 5.1e-11 71.2 97 37.1
HPP92_022388 Vanilla planifolia HOM05D001734 ORTHO05D006943 8.7e-11 70.5 88 46.6
ATR0661G423 Amborella trichopoda HOM05D001734 ORTHO05D006943 1.5e-10 69.7 87 39.1
AT5G40820 Arabidopsis thaliana HOM05D001734 ORTHO05D006943 1.9e-10 69.3 97 35.1
SEGI_35062 Sequoiadendron giganteum HOM05D001734 ORTHO05D006943 1.9e-10 69.3 76 46.1
AL7G48900 Arabidopsis lyrata HOM05D001734 ORTHO05D006943 4.8e-09 64.7 97 33.0
Zm00001eb228310 Zea mays HOM05D001734 ORTHO05D006943 3.1e-08 62.0 90 36.7
BcaB06g27763 Brassica carinata HOM05D001734 ORTHO05D006943 4.5e-07 58.2 97 32.0
PSO170G5954 Papaver somniferum HOM05D001734 ORTHO05D023218 2.2e-06 55.8 54 53.7
arahy.Tifrunner.gnm1.ann1.BIP73Y Arachis hypogaea HOM05D006870 ORTHO05D008475 8.4e-06 53.9 57 42.1


User provided reference genes

Program Settings