Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 4.9e-155 551.2 298 100.0
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 7.8e-145 517.3 297 93.9
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 1.6e-110 403.3 323 67.8
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 2.0e-108 396.4 322 65.8
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 2.2e-107 392.9 322 65.5
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 3.2e-106 389.0 318 66.7
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 4.2e-106 388.7 322 65.5
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 4.2e-106 388.7 321 65.1
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 1.0e-104 384.0 309 68.6
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 1.0e-104 384.0 322 64.0
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 3.0e-104 382.5 322 67.7
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 3.9e-104 382.1 322 67.7
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 8.7e-104 380.9 325 68.6
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 1.1e-103 380.6 323 62.8
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.5e-103 380.2 322 67.1
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 5.6e-103 378.3 322 65.8
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 5.6e-103 378.3 322 67.1
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 1.6e-102 376.7 326 67.8
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 6.2e-102 374.8 322 63.0
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 1.1e-101 374.0 321 63.2
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 2.4e-101 372.9 322 61.8
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 2.4e-101 372.9 322 64.6
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 1.5e-100 370.2 321 62.6
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 3.4e-100 369.0 325 62.2
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 3.4e-100 369.0 321 61.1
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 4.5e-100 368.6 321 64.8
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 9.9e-100 367.5 318 65.4
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 1.3e-99 367.1 325 62.8
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 6.4e-99 364.8 341 63.3
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 6.4e-99 364.8 322 61.8
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.1e-98 364.0 322 61.2
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 2.4e-98 362.8 321 62.3
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 4.2e-98 362.1 318 66.4
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 4.2e-98 362.1 318 66.4
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 5.5e-98 361.7 318 66.4
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 7.1e-98 361.3 318 66.4
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 9.3e-98 360.9 318 62.9
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 1.6e-97 360.1 319 62.7
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 1.6e-97 360.1 324 61.7
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 2.1e-97 359.8 320 63.1
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 2.1e-97 359.8 309 63.8
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 2.1e-97 359.8 309 63.8
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 2.1e-97 359.8 289 69.2
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 3.5e-97 359.0 324 62.3
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 6.0e-97 358.2 318 59.7
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 6.0e-97 358.2 318 59.7
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 6.0e-97 358.2 321 61.1
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 6.0e-97 358.2 322 60.6
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 7.9e-97 357.8 318 59.7
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 7.9e-97 357.8 311 63.3
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 7.9e-97 357.8 318 59.7
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 7.9e-97 357.8 318 59.7
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 7.9e-97 357.8 306 65.4
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 1.0e-96 357.5 309 62.8
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.3e-96 357.1 309 63.1
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 2.3e-96 356.3 313 62.9
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 2.3e-96 356.3 338 60.7
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 2.3e-96 356.3 322 59.9
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 3.0e-96 355.9 302 67.2
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 3.9e-96 355.5 321 59.5
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 5.1e-96 355.1 324 60.5
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 6.7e-96 354.8 324 60.2
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 8.7e-96 354.4 324 64.2
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 1.1e-95 354.0 247 76.1
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 1.9e-95 353.2 323 61.3
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 9.6e-95 350.9 251 68.5
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 1.3e-94 350.5 305 62.6
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 1.6e-94 350.1 321 59.5
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 2.1e-94 349.7 246 72.4
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 2.1e-94 349.7 324 63.0
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 2.1e-94 349.7 324 63.0
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 2.8e-94 349.4 251 68.1
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 3.7e-94 349.0 323 58.2
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 3.7e-94 349.0 328 60.4
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 3.7e-94 349.0 269 65.1
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 8.1e-94 347.8 251 67.3
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 8.1e-94 347.8 251 67.3
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 8.1e-94 347.8 311 58.2
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 1.1e-93 347.4 251 69.7
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 1.1e-93 347.4 251 66.9
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 2.4e-93 346.3 311 59.8
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 4.0e-93 345.5 283 65.7
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 5.3e-93 345.1 321 59.8
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 6.9e-93 344.7 291 63.6
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 9.0e-93 344.4 246 69.5
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 9.0e-93 344.4 246 69.5
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 1.5e-92 343.6 323 56.7
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 1.5e-92 343.6 327 59.0
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 1.5e-92 343.6 323 58.2
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 2.6e-92 342.8 247 70.4
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 3.4e-92 342.4 246 68.7
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 5.8e-92 341.7 251 65.3
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 1.0e-91 340.9 323 58.2
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 1.0e-91 340.9 246 73.2
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 1.3e-91 340.5 323 59.8
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 2.9e-91 339.3 323 61.0
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 8.4e-91 337.8 322 57.5
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 1.1e-90 337.4 322 58.7
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 1.1e-90 337.4 322 58.7
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 2.5e-90 336.3 322 57.8
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 1.2e-89 334.0 284 63.4
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 7.9e-89 331.3 297 57.9
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 1.3e-88 330.5 312 58.7
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 6.7e-88 328.2 325 53.5
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 8.7e-88 327.8 331 54.7
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 1.1e-87 327.4 271 63.1
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 1.1e-87 327.4 324 55.6
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 4.3e-87 325.5 282 61.7
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 4.3e-87 325.5 317 56.5
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 2.8e-86 322.8 284 62.7
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 8.2e-86 321.2 321 55.8
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 1.1e-85 320.9 292 64.4
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 1.4e-85 320.5 267 63.7
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 1.8e-85 320.1 318 56.0
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 3.1e-85 319.3 286 62.2
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 6.9e-85 318.2 246 66.3
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 2.0e-84 316.6 309 57.3
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 3.4e-84 315.8 231 68.8
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 3.4e-84 315.8 251 64.5
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 7.6e-84 314.7 210 75.2
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 1.0e-83 314.3 325 56.3
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 2.9e-83 312.8 249 62.2
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 1.1e-82 310.8 213 71.4
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 2.5e-82 309.7 308 56.8
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.5e-79 300.4 307 57.3
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 2.2e-78 296.6 247 58.3
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 4.8e-78 295.4 289 58.8
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 2.9e-75 286.2 254 58.7
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 3.6e-73 279.3 210 70.5
QL02p069440 Quercus lobata HOM05D002112 ORTHO05D005830 1.1e-71 274.2 212 68.9
TAR623G0168 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.1e-71 274.2 235 64.3
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 1.4e-69 267.3 247 53.8
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 1.8e-69 266.9 245 52.2
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 5.3e-69 265.4 271 49.4
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 5.3e-69 265.4 222 61.7
HPP92_018143 Vanilla planifolia HOM05D002112 ORTHO05D005830 6.9e-69 265.0 314 49.0
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 4.5e-68 262.3 245 51.4
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 4.5e-68 262.3 246 51.2
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 9.7e-63 244.6 246 49.2
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 3.0e-56 223.0 223 55.2
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 1.5e-55 220.7 306 43.8
MCO07G431 Micromonas commoda HOM05D002112 ORTHO05D005830 6.5e-51 205.3 247 43.3
Cre16.g694400 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005830 8.0e-49 198.4 261 44.4
Glyma.02G275800 Glycine max HOM05D002112 ORTHO05D005830 7.0e-45 185.3 175 56.6
PRCOL_00002736 Prasinoderma coloniale HOM05D002112 ORTHO05D005830 1.0e-43 181.4 241 41.5
Sc07g0004100 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.4e-40 171.0 174 55.7
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 2.0e-39 167.2 128 70.3
Gohir.A08G072300 Gossypium hirsutum HOM05D002112 ORTHO05D010805 1.3e-22 111.3 102 65.7
Sc07g0004110 Simmondsia chinensis HOM05D002112 ORTHO05D010805 8.6e-11 72.0 51 70.6
TAR623G1172 Trochodendron aralioides HOM05D002112 ORTHO05D005830 8.6e-11 72.0 68 55.9
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 3.3e-10 70.1 59 61.0
Cre09.g395028 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D143200 1.2e-09 68.2 105 37.1


User provided reference genes

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