Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 3.7e-241 837.8 426 100.0
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 9.2e-200 700.3 416 85.1
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 1.1e-189 666.8 418 82.3
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 3.7e-172 608.6 419 72.8
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 4.5e-170 601.7 412 74.8
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 5.8e-170 601.3 417 74.1
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.2e-167 593.6 429 72.0
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 2.3e-166 589.3 428 72.2
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 3.0e-166 589.0 428 72.0
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 5.1e-166 588.2 408 75.7
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 4.3e-165 585.1 411 73.5
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 2.2e-164 582.8 419 70.4
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 3.7e-164 582.0 402 74.1
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 8.2e-164 580.9 458 65.9
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 4.1e-163 578.6 467 64.9
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 4.5e-162 575.1 386 76.2
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 5.9e-162 574.7 406 71.9
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 7.6e-162 574.3 458 65.5
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.3e-161 573.5 394 75.9
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 2.2e-161 572.8 409 74.3
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.9e-161 572.4 440 67.5
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 8.5e-161 570.9 409 71.9
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 8.5e-161 570.9 383 76.0
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.1e-160 570.5 400 72.8
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 2.5e-160 569.3 384 75.5
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 3.2e-160 568.9 416 71.6
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 9.4e-160 567.4 370 75.1
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 2.1e-159 566.2 437 68.9
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 2.7e-159 565.8 400 71.8
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.4e-158 563.5 359 76.3
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 1.4e-158 563.5 388 71.4
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 2.3e-158 562.8 413 71.4
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.3e-157 558.5 370 74.6
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 7.4e-157 557.8 389 75.6
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 2.2e-156 556.2 410 71.5
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 2.2e-156 556.2 418 70.6
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.8e-155 553.1 398 71.9
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 3.1e-155 552.4 416 70.7
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 4.1e-155 552.0 399 71.4
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 6.9e-155 551.2 396 72.7
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 7.7e-154 547.7 405 72.1
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 1.0e-153 547.4 435 66.0
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 2.2e-153 546.2 352 77.6
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 1.6e-151 540.0 443 64.6
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 2.1e-151 539.7 337 80.7
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 3.6e-151 538.9 409 69.9
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 7.9e-151 537.7 397 69.5
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 2.3e-150 536.2 398 68.6
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 5.1e-150 535.0 402 71.1
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 6.7e-150 534.6 405 68.4
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 1.5e-149 533.5 395 70.4
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 2.0e-149 533.1 399 70.7
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.0e-149 533.1 397 69.3
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 9.7e-149 530.8 334 78.7
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 1.3e-148 530.4 395 70.1
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 2.2e-148 529.6 397 69.0
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 6.3e-148 528.1 352 76.4
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 9.1e-147 524.2 386 69.9
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 1.2e-146 523.9 349 74.5
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 3.8e-145 518.8 399 67.4
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 6.5e-145 518.1 350 75.1
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 7.2e-144 514.6 387 69.5
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 1.4e-142 510.4 399 67.2
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 4.8e-140 501.9 396 67.2
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 7.0e-139 498.0 404 66.8
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 1.7e-137 493.4 395 66.3
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 2.9e-137 492.7 402 65.4
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 1.5e-136 490.3 395 65.6
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 1.9e-136 490.0 395 66.1
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 9.4e-136 487.6 395 65.3
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 6.7e-134 481.5 323 74.3
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 2.2e-132 476.5 300 78.0
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 4.8e-132 475.3 393 62.6
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 2.7e-130 469.5 335 72.8
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 2.7e-130 469.5 361 69.3
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 2.7e-130 469.5 361 69.3
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 3.5e-130 469.2 370 67.3
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 5.9e-130 468.4 358 69.0
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 7.7e-130 468.0 400 64.2
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 1.3e-129 467.2 444 57.7
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.7e-129 466.8 400 62.5
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 2.2e-129 466.5 451 57.2
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 3.8e-129 465.7 370 67.0
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 9.4e-128 461.1 329 71.1
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 6.1e-127 458.4 348 65.8
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 6.1e-127 458.4 340 69.1
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 1.8e-126 456.8 280 81.1
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 1.8e-126 456.8 444 57.4
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 4.0e-126 455.7 352 66.8
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 8.8e-126 454.5 403 60.0
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 1.3e-124 450.7 400 60.8
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.0e-121 441.0 417 59.0
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 1.7e-116 423.7 415 56.9
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.9e-112 410.2 284 73.9
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.9e-112 410.2 284 73.9
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 3.3e-112 409.5 284 73.6
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 1.8e-78 297.4 351 46.7
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 2.0e-77 293.9 231 68.4
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 3.4e-77 293.1 175 80.6
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 9.3e-75 285.0 294 51.0
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 1.0e-73 281.6 341 46.9
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 7.9e-66 255.4 278 50.4
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 1.3e-60 238.0 189 67.2
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 1.6e-55 221.1 210 58.1
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 2.0e-53 214.2 163 69.3
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 7.9e-50 202.2 307 41.4
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 1.3e-49 201.4 288 42.7
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 3.9e-49 199.9 301 39.2
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 4.3e-48 196.4 292 42.1
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 5.7e-48 196.1 451 33.7
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 3.2e-35 153.7 152 52.6
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 7.2e-35 152.5 286 39.2
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 3.5e-29 133.7 147 53.1
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 4.7e-26 123.2 94 66.0
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 3.1e-22 110.5 83 66.3
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 2.0e-16 91.3 98 46.9
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 2.0e-16 91.3 98 46.9
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 3.4e-16 90.5 98 45.9
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.8e-14 84.7 191 31.4
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 4.1e-14 83.6 70 57.1
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 2.0e-13 81.3 70 55.7
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 1.3e-12 78.6 71 50.7
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 6.5e-12 76.3 56 62.5
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 6.5e-12 76.3 56 62.5
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 1.6e-10 71.6 64 56.2
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 1.8e-09 68.2 80 52.5
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 2.8e-07 60.8 187 32.1
FvH4_1g06200 Fragaria vesca HOM05D005801 ORTHO05D045617 4.9e-07 60.1 90 46.7
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 1.8e-06 58.2 87 42.5
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 1.8e-06 58.2 87 42.5
Medtr8g046830 Medicago truncatula HOM05D005801 ORTHO05D008555 1.8e-06 58.2 49 63.3
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 2.4e-06 57.8 188 31.9
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 5.4e-06 56.6 186 29.6
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 5.4e-06 56.6 129 34.9
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 9.1e-06 55.8 184 28.8


User provided reference genes

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