Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 2110.9 1055 100.0
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1807.7 1055 85.3
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1781.1 1056 85.0
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1725.3 1055 81.6
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1724.5 1057 81.9
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1714.1 1055 79.5
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1705.3 1055 80.3
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1700.6 1055 79.8
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1697.6 1055 79.8
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1691.4 1055 79.8
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1676.8 1055 78.6
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1665.6 1057 79.0
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1664.8 1058 77.9
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1661.7 1055 78.4
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1659.8 1057 77.9
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1651.7 1054 77.8
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1650.6 1058 77.7
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1649.0 1055 77.5
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1642.9 1055 76.8
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1641.3 1052 76.7
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1630.5 1055 76.6
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1629.8 1055 77.3
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1629.8 1056 76.2
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1625.9 1052 76.7
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1625.9 1120 73.0
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1619.8 1055 76.4
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1618.2 1055 76.2
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1616.3 1055 76.5
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1611.7 1059 75.3
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1610.9 1056 75.8
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1607.0 1041 77.4
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1606.7 1052 75.7
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1605.1 1141 71.7
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1599.7 1055 75.6
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1599.7 1146 71.7
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1595.5 1075 74.5
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1593.6 1075 74.4
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1593.6 1058 73.9
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1587.4 1053 74.8
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1585.5 1059 74.1
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1585.1 1059 74.0
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1583.9 960 82.8
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1572.4 1054 74.3
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1570.8 1061 75.0
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1570.1 1045 74.2
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1564.3 1061 74.3
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1561.2 1040 74.7
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1556.6 1054 73.7
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1555.8 1056 72.3
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1550.0 1058 72.1
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1547.3 1054 73.3
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1545.4 1055 71.7
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1544.6 1132 70.2
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1544.6 1053 71.9
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1541.2 1055 72.3
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1538.9 1052 71.5
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1538.1 1057 72.5
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1535.8 800 96.0
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1535.4 1056 73.0
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1532.3 1055 73.3
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1530.8 1056 71.8
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1529.2 1055 71.8
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1528.1 1055 72.3
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1527.3 1055 72.6
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1526.9 1055 72.6
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1525.8 1056 70.9
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1525.4 1055 71.8
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1523.5 1056 71.4
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1523.5 1055 73.3
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1523.1 1056 70.8
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1517.3 1057 70.8
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1516.5 1060 71.5
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1511.9 1051 71.8
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1504.2 978 76.8
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1503.0 1053 69.8
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1488.8 1062 70.5
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1486.9 947 78.7
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1485.7 1066 71.4
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1479.5 1055 69.7
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1477.2 1059 69.4
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1465.7 1056 69.4
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1465.3 1096 67.6
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1459.5 1263 59.7
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1456.8 1060 68.3
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1453.0 1055 70.0
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1449.5 1062 69.1
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1428.7 1068 67.5
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1364.7 864 78.7
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1347.8 845 77.8
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1320.8 1054 63.7
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1290.8 852 74.8
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1179.9 790 72.9
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1112.8 960 61.8
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1110.9 790 70.8
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1103.2 1077 53.6
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 5.3e-305 1051.2 1061 52.2
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 2.1e-293 1012.7 1073 51.0
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 1.4e-278 963.4 778 63.4
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 8.8e-276 954.1 951 56.8
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 2.9e-271 939.1 633 73.8
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 7.3e-246 854.7 662 65.6
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.0e-239 834.3 517 76.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.3e-239 833.2 518 77.4
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 4.8e-213 745.7 450 78.0
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.1e-212 744.6 473 74.6
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.8e-212 743.8 450 77.6
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 6.9e-212 741.9 471 74.7
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 7.6e-211 738.4 453 77.3
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.2e-210 736.9 700 55.9
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 2.9e-210 736.5 450 78.4
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 2.5e-206 723.4 450 75.1
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.3e-206 723.0 497 69.8
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 2.4e-204 716.8 455 74.5
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.8e-199 700.7 452 73.7
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 1.9e-198 697.2 450 75.1
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.9e-190 670.6 485 67.6
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 2.3e-175 620.5 428 72.2
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 3.2e-169 600.1 456 64.9
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 6.1e-168 595.9 400 74.5
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 2.3e-167 594.0 450 65.6
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 3.3e-166 590.1 450 64.2
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 3.8e-162 576.6 613 52.7
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 6.7e-159 565.8 366 74.3
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.1e-158 565.1 366 74.6
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 5.7e-158 562.8 405 70.1
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 2.6e-142 510.8 1116 32.2
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 3.9e-122 443.7 267 78.3
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 2.2e-117 427.9 242 86.0
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 1.0e-114 419.1 286 72.7
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.3e-114 418.7 271 76.4
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.2e-104 385.6 266 73.3
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 2.1e-104 384.8 314 63.7
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 3.1e-103 380.9 216 84.3
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 9.3e-100 369.4 238 74.8
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 7.8e-99 366.3 243 74.9
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 8.2e-72 276.6 155 83.2
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 5.9e-70 270.4 210 65.7
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 6.1e-67 260.4 206 66.5
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 1.1e-65 256.1 286 48.3
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 8.5e-53 213.4 183 66.1
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 4.1e-47 194.5 157 65.0
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.2e-45 188.7 156 60.3
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.9e-44 185.7 122 71.3
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 8.0e-43 180.3 180 56.7
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 1.3e-37 162.9 110 73.6
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 1.0e-34 153.3 106 72.6
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.4e-31 142.9 137 54.7
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 3.1e-31 141.7 137 54.0
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 1.2e-30 139.8 97 71.1
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.7e-29 136.0 96 66.7
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 3.8e-29 134.8 83 73.5
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.1e-28 133.3 85 65.9
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 4.7e-27 127.9 96 63.5
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 5.0e-21 107.8 54 88.9
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 5.6e-20 104.4 79 65.8
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 1.2e-19 103.2 77 67.5
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 4.0e-18 98.2 62 77.4
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 7.5e-17 94.0 79 65.8
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 9.8e-17 93.6 83 53.0
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 2.9e-16 92.0 58 69.0
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 7.0e-15 87.4 56 67.9
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 1.2e-14 86.7 53 77.4
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 1.0e-13 83.6 74 62.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.2e-11 76.6 74 54.1
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 4.7e-11 74.7 79 51.9
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 8.9e-10 70.5 41 73.2
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.6e-09 68.9 74 50.0
MBI12_g24383_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 8.3e-08 63.9 56 60.7
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.1e-07 63.5 48 66.7
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 1.1e-07 63.5 44 61.4
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.2e-06 60.1 70 50.0
MBI03_g26335_MAGBIO Magnolia biondii HOM05D000553 ORTHO05D244274 3.5e-06 58.5 57 59.6


User provided reference genes

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