Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.2e-116 421.8 218 100.0
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.4e-111 405.6 215 97.2
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 2.0e-110 402.5 218 94.5
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 2.1e-107 392.5 217 93.1
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.4e-106 389.8 218 89.9
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.8e-106 389.4 218 90.4
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 3.0e-106 388.7 218 89.9
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.0e-106 388.3 218 89.0
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 6.8e-106 387.5 218 90.4
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 8.9e-106 387.1 215 91.6
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 3.4e-105 385.2 218 88.5
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 4.4e-105 384.8 218 89.9
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.4e-105 384.8 217 88.5
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 5.7e-105 384.4 218 89.9
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 5.7e-105 384.4 218 89.4
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 3.7e-104 381.7 215 88.8
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 4.9e-104 381.3 218 88.1
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.9e-104 381.3 211 91.5
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 4.9e-104 381.3 218 88.1
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 8.3e-104 380.6 294 73.5
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 2.4e-103 379.0 218 88.1
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.1e-103 378.3 218 88.1
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 5.4e-103 377.9 218 87.6
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.6e-102 376.3 215 87.4
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 1.6e-102 376.3 215 87.4
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 2.0e-102 375.9 211 89.6
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 2.0e-102 375.9 218 87.2
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 3.5e-102 375.2 218 87.6
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 3.5e-102 375.2 215 87.0
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 4.6e-102 374.8 218 87.6
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 4.6e-102 374.8 218 87.2
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 4.6e-102 374.8 218 88.1
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 7.8e-102 374.0 218 86.2
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 1.7e-101 372.9 218 87.2
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 1.7e-101 372.9 218 87.2
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 1.7e-101 372.9 218 87.2
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 1.7e-101 372.9 218 87.2
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.7e-101 372.9 218 86.2
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 2.3e-101 372.5 218 86.2
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 2.3e-101 372.5 218 86.2
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.3e-101 372.5 217 87.1
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.0e-101 372.1 218 85.8
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 3.9e-101 371.7 218 86.7
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 6.6e-101 370.9 217 87.1
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 6.6e-101 370.9 218 86.2
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 1.1e-100 370.2 218 86.2
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.5e-100 369.8 218 85.3
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 1.5e-100 369.8 218 84.9
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 4.3e-100 368.2 218 84.4
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 85.8
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 7.3e-100 367.5 220 86.4
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.2e-99 366.7 218 84.9
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 2.1e-99 365.9 218 84.4
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 2.1e-99 365.9 207 89.4
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 2.1e-99 365.9 218 85.8
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 3.6e-99 365.2 218 85.8
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 83.9
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 86.2
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 6.2e-99 364.4 218 83.9
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.4e-98 363.2 211 86.3
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.8e-98 362.8 206 88.8
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 5.2e-98 361.3 223 82.1
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 5.2e-98 361.3 207 89.4
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 6.8e-98 360.9 218 83.5
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 1.5e-97 359.8 218 81.7
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.0e-97 359.4 218 83.5
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 3.4e-97 358.6 218 83.9
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 4.4e-97 358.2 215 83.7
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.4e-97 358.2 214 84.1
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 7.5e-97 357.5 218 81.7
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 9.8e-97 357.1 218 82.1
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.3e-96 356.7 215 83.3
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.3e-96 356.7 209 86.6
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 2.2e-96 355.9 218 81.2
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 2.2e-96 355.9 204 89.7
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 2.9e-96 355.5 207 86.5
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 4.9e-96 354.8 220 83.2
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 6.4e-96 354.4 207 86.5
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.1e-95 353.6 218 81.7
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 4.1e-95 351.7 215 85.1
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 5.4e-95 351.3 221 81.0
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 7.0e-95 350.9 218 79.8
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 1.2e-94 350.1 218 82.6
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.6e-94 349.7 218 81.2
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.5e-94 348.6 218 80.3
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 5.0e-93 344.7 219 79.9
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 6.6e-93 344.4 219 79.9
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 8.6e-93 344.0 219 79.9
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 8.6e-93 344.0 219 79.9
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 1.1e-92 343.6 219 79.9
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 1.1e-92 343.6 219 79.9
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.5e-92 343.2 203 84.2
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 1.9e-92 342.8 221 80.1
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 3.3e-92 342.0 215 80.9
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.3e-92 341.7 202 84.2
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 9.5e-92 340.5 215 80.5
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 6.2e-91 337.8 215 80.0
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.1e-90 337.0 218 78.9
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 5.8e-89 331.3 211 78.7
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 2.9e-88 328.9 196 84.7
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.1e-87 327.0 215 79.1
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 4.1e-87 325.1 218 74.8
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 5.4e-87 324.7 202 78.2
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 7.1e-87 324.3 211 74.9
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 1.6e-86 323.2 277 61.7
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 6.0e-86 321.2 203 76.8
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 4.0e-82 308.5 185 83.8
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 1.3e-80 303.5 185 85.4
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 3.9e-77 292.0 164 88.4
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 3.9e-77 292.0 174 85.6
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 2.5e-76 289.3 201 75.1
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 2.8e-75 285.8 173 82.7
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.7e-72 276.6 219 59.8
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 2.2e-72 276.2 210 65.2
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 7.8e-70 267.7 210 63.8
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 2.3e-69 266.2 218 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 8.4e-64 247.7 210 60.0
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 7.1e-63 244.6 145 86.9
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 3.0e-61 239.2 212 62.3
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 8.7e-61 237.7 139 84.2
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 5.6e-60 235.0 145 84.8
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 4.9e-56 221.9 176 69.9
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.7e-54 216.1 152 77.6
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-52 210.7 215 56.7
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 2.2e-48 196.4 119 83.2
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 4.9e-48 195.3 174 62.1
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 4.6e-46 188.7 110 80.9
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.6e-43 180.3 162 56.8
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 1.0e-40 171.0 215 50.2
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 2.8e-35 152.9 84 94.0
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 4.1e-34 149.1 91 87.9
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 4.5e-25 119.0 81 77.8
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 9.1e-18 94.7 56 78.6
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 2.6e-17 93.2 48 89.6
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.3e-16 90.9 46 91.3
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 3.2e-15 86.3 53 71.7
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 5.5e-15 85.5 66 72.7
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 2.0e-12 77.0 88 52.3
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 6.5e-08 62.0 34 85.3
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 1.9e-07 60.5 34 85.3


User provided reference genes

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