Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1462.2 727 100.0
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1313.9 727 90.2
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1274.2 750 87.1
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1273.5 750 86.9
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1233.0 726 85.7
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1199.1 724 84.1
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1198.0 741 81.9
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1197.6 717 84.8
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1196.0 714 85.3
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1194.9 719 84.4
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1194.1 719 83.6
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1193.3 727 84.2
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1193.3 731 83.3
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1192.2 643 91.3
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1191.8 718 84.5
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1190.3 717 84.1
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1188.3 706 85.4
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1187.6 736 82.9
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1186.8 728 83.5
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1181.4 731 83.4
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1180.2 719 83.0
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1179.9 727 82.1
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1179.9 696 85.8
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1177.5 697 84.5
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1177.2 677 85.7
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1177.2 692 85.1
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1176.4 656 89.2
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1168.7 725 82.2
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1168.3 696 83.5
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1168.3 709 81.9
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1168.3 706 83.6
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1167.1 727 82.4
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1162.9 732 82.5
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1162.9 717 82.6
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1160.6 654 88.1
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1157.5 716 82.7
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1156.0 715 82.4
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1156.0 759 79.2
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1154.0 759 79.2
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1153.7 723 80.8
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1152.9 711 82.7
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1152.9 673 84.8
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1151.0 709 82.5
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1145.2 698 83.1
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1142.9 710 80.7
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1142.5 733 79.1
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1140.6 699 82.4
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1140.6 711 80.5
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1140.6 706 82.6
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1140.2 707 82.2
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1138.6 646 86.4
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1136.3 721 80.9
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1125.9 775 75.2
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1125.9 775 75.2
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1124.0 726 79.8
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1121.7 647 85.9
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1119.8 814 73.0
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1117.1 700 81.3
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1117.1 744 76.6
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1115.1 706 80.5
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1113.2 722 79.4
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1112.1 720 79.4
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1110.1 626 87.5
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1108.6 636 86.5
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1107.4 919 65.3
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1107.0 711 80.2
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1106.3 626 87.5
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1106.3 626 87.5
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 655 82.9
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1105.1 656 84.1
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1100.5 644 85.4
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1100.5 719 78.6
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1095.1 710 79.2
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1095.1 722 78.8
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 0.0e+00 1094.3 745 77.9
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 639 82.8
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 635 86.0
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 0.0e+00 1084.7 793 72.5
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 0.0e+00 1080.9 789 72.9
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1078.9 657 80.8
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.5e-311 1072.4 725 76.6
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 3.5e-308 1061.2 754 74.7
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 1.7e-302 1042.3 662 81.1
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.5e-295 1019.2 661 76.7
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 5.6e-290 1000.7 570 86.5
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 6.2e-289 997.3 647 75.3
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 3.9e-283 978.0 627 76.4
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 5.9e-279 964.1 560 87.7
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 6.7e-275 950.7 537 87.5
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 4.3e-274 948.0 529 88.8
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.5e-271 939.5 528 88.6
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 4.7e-268 927.9 509 89.6
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 1.0e-267 926.8 647 72.8
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.8e-267 926.0 599 75.3
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 2.3e-267 925.6 532 84.6
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 2.6e-266 922.2 546 85.3
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 8.0e-260 900.6 596 77.9
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 3.3e-258 895.2 605 75.2
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.3e-257 893.3 646 69.2
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.0e-246 857.1 623 68.4
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.6e-242 842.4 466 89.3
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.3e-235 819.3 712 63.8
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 5.8e-226 788.1 612 65.4
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.3e-222 776.2 494 79.6
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.7e-191 672.9 385 84.4
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 1.6e-188 663.7 406 83.3
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 5.4e-184 648.7 402 79.4
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 8.7e-182 641.3 352 88.9
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 1.9e-176 623.6 401 78.1
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.3e-156 557.8 305 88.5
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.1e-144 518.1 447 63.5
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 2.9e-137 493.4 376 71.8
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.4e-131 474.6 594 43.3
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 3.1e-123 446.8 653 39.4
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 5.0e-113 412.9 659 39.3
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 9.5e-112 408.7 370 61.1
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 2.1e-103 380.9 486 44.0
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.2e-99 367.1 227 82.8
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 3.5e-98 363.6 330 60.9
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.3e-81 308.5 169 90.5
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 1.1e-78 298.9 161 89.4
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 9.3e-59 232.6 204 59.3
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.1e-58 231.5 162 67.3
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 4.1e-54 217.2 137 81.0
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 4.2e-51 207.2 114 92.1
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 4.2e-43 180.6 253 46.2
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 3.6e-42 177.6 182 50.5
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 3.3e-40 171.0 105 76.2
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 9.7e-40 169.5 139 68.3
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 3.7e-39 167.5 213 47.4
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 2.5e-35 154.8 112 67.9
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.2e-34 152.5 106 70.8
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 2.3e-33 148.3 80 88.8
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 3.0e-33 147.9 95 74.7
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.1e-32 146.0 98 77.6
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 1.1e-32 146.0 83 84.3
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 1.2e-29 136.0 71 81.7
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.5e-28 130.2 80 82.5
Haze_25304 Corylus avellana HOM05D003080 ORTHO05D009457 6.5e-28 130.2 64 95.3
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 3.2e-27 127.9 85 76.5
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 7.5e-24 116.7 73 80.8
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 1.5e-16 92.4 143 40.6
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 9.8e-16 89.7 47 78.7
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 2.4e-14 85.1 48 77.1
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 5.9e-13 80.5 41 92.7
Cpa.g.c37459 Carica papaya HOM05D005018 ORTHO05D043556 5.4e-06 57.4 27 96.3


User provided reference genes

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