Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 0.0e+00 1356.3 706 100.0
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 0.0e+00 1295.0 723 93.8
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 0.0e+00 1085.1 707 80.2
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 2.8e-310 1068.1 708 79.8
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.5e-295 1019.2 708 76.4
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 2.2e-283 978.8 711 73.3
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 3.1e-277 958.4 710 71.4
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 3.2e-274 948.3 711 71.2
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 3.0e-272 941.8 708 70.2
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 1.1e-271 939.9 708 71.3
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 1.7e-270 936.0 713 70.4
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.3e-269 931.0 724 68.6
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.6e-263 912.1 717 70.6
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 5.7e-263 911.0 696 69.8
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 2.8e-262 908.7 710 68.9
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.4e-261 905.6 708 68.1
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 7.0e-261 904.0 710 68.9
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 9.1e-261 903.7 712 68.3
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 7.7e-260 900.6 719 68.0
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.5e-259 897.5 712 68.1
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 4.2e-258 894.8 713 68.0
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.5e-258 894.4 713 67.0
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.7e-257 892.1 709 67.4
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 5.2e-256 887.9 726 66.1
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.4e-255 885.2 705 67.9
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.4e-255 884.8 708 66.7
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.7e-255 884.4 712 67.8
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 9.8e-255 883.6 709 67.7
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.8e-254 882.1 719 68.0
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.8e-254 881.3 712 67.4
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.8e-253 879.4 711 66.8
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.1e-253 878.6 711 67.4
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.4e-253 877.9 712 67.4
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.7e-252 875.5 711 67.7
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.9e-252 874.4 708 66.4
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 1.9e-250 869.4 710 67.3
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 3.3e-250 868.6 734 65.3
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 1.2e-249 866.7 696 67.0
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.4e-248 863.2 711 65.8
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.0e-248 862.1 697 67.9
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.2e-248 861.3 709 65.9
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.5e-247 859.8 707 65.6
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.2e-246 855.9 712 66.2
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 4.1e-245 851.7 696 67.2
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 3.5e-244 848.6 710 64.8
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 4.5e-244 848.2 706 65.2
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.7e-243 846.3 696 65.7
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 2.9e-243 845.5 708 65.8
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 8.9e-240 833.9 715 64.2
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 3.4e-239 832.0 712 64.3
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 5.8e-239 831.2 721 63.8
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 3.7e-238 828.6 710 63.8
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 4.9e-238 828.2 717 63.9
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 4.9e-238 828.2 712 62.9
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 8.3e-238 827.4 721 62.6
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 2.4e-237 825.9 714 63.9
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 7.0e-237 824.3 698 65.0
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 5.0e-235 818.1 717 63.3
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.6e-233 812.0 712 63.9
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 6.2e-233 811.2 712 62.5
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.1e-232 810.4 712 63.8
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 5.2e-232 808.1 712 64.7
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 4.4e-231 805.1 710 63.2
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 2.7e-228 795.8 709 61.2
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 6.0e-228 794.7 723 61.3
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 6.0e-228 794.7 712 62.1
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 7.8e-228 794.3 713 64.0
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.3e-227 793.5 711 62.6
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.3e-227 793.5 725 61.2
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 5.6e-226 788.1 711 61.7
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 5.6e-226 788.1 718 64.1
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.8e-224 783.1 707 60.0
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 8.9e-224 780.8 712 61.7
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 2.6e-223 779.2 714 61.9
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 2.2e-222 776.2 710 60.0
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 4.9e-222 775.0 706 61.5
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 3.9e-219 765.4 710 59.6
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 2.5e-218 762.7 707 59.5
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 7.3e-218 761.1 713 61.2
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.8e-217 759.2 711 59.2
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 3.6e-217 758.8 715 59.9
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 4.7e-217 758.4 710 60.1
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 3.1e-216 755.7 722 60.0
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 5.2e-216 755.0 712 61.0
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 5.2e-216 755.0 714 59.2
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 3.4e-215 752.3 711 60.3
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 7.6e-215 751.1 711 60.1
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 9.9e-215 750.7 721 58.5
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 2.9e-214 749.2 710 60.1
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 4.2e-213 745.3 710 58.9
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 4.2e-213 745.3 707 59.3
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 2.3e-211 739.6 710 59.4
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 2.3e-211 739.6 710 59.4
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 8.7e-211 737.6 711 59.8
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.5e-210 736.9 714 58.8
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 1.9e-210 736.5 710 59.6
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.3e-209 733.8 709 57.3
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 4.8e-209 731.9 710 59.2
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.1e-208 730.7 709 57.8
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 4.0e-208 728.8 711 58.6
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 1.7e-206 723.4 712 58.6
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 4.9e-206 721.8 712 58.3
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.6e-204 716.8 723 59.1
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.1e-204 716.5 867 49.4
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 3.9e-203 712.2 712 56.3
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 4.9e-198 695.3 714 57.6
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 4.9e-198 695.3 719 56.5
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 1.4e-197 693.7 642 61.8
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 3.2e-197 692.6 716 57.7
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 7.4e-194 681.4 701 56.6
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 9.6e-194 681.0 706 55.5
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 2.4e-192 676.4 729 56.5
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.0e-191 673.3 720 54.9
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 4.6e-188 662.1 720 54.3
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.3e-187 659.8 713 53.7
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 3.9e-187 659.1 604 62.4
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 8.4e-182 641.3 698 56.0
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.5e-181 639.8 740 51.5
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 7.1e-181 638.3 719 54.8
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.6e-180 637.1 710 54.1
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 7.4e-178 628.2 715 53.6
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 2.2e-177 626.7 697 53.8
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 1.5e-175 620.5 709 52.8
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.0e-159 567.0 378 78.3
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 6.5e-158 562.0 737 49.7
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.3e-155 553.5 696 50.6
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.3e-145 518.5 373 74.0
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.1e-144 516.5 734 45.8
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 7.2e-141 505.4 319 83.4
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.0e-139 500.0 375 68.3
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.0e-139 500.0 375 68.3
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 5.2e-139 499.2 544 55.1
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 3.0e-131 473.4 321 75.7
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 9.2e-120 435.3 389 59.4
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.3e-110 404.8 492 49.6
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 5.1e-110 402.9 391 59.1
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 1.0e-102 378.6 734 38.7
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 2.3e-102 377.5 749 39.1
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.8e-99 367.9 632 40.2
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 1.8e-99 367.9 722 38.5
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 4.8e-92 343.2 800 35.6
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 2.0e-90 337.8 392 50.8
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 8.7e-70 269.2 337 52.8
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.3e-69 267.3 412 45.6
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 2.6e-66 257.7 349 47.0
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.1e-62 243.4 351 45.0
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 9.7e-61 239.2 459 37.5
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.0e-58 231.5 151 79.5
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 2.5e-56 224.6 858 28.8
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 4.8e-44 183.7 258 43.8
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.8e-43 181.8 181 56.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 3.8e-41 174.1 246 43.5
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.5e-40 171.4 152 54.6
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 6.1e-39 166.8 164 57.3
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 9.4e-32 142.9 387 28.4
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.5e-29 135.6 371 29.4
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 7.0e-27 126.7 69 91.3
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 1.6e-26 125.6 69 89.9
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.3e-25 122.5 159 45.9
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 8.8e-22 109.8 499 25.1
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.4e-21 107.5 57 94.7
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 5.7e-21 107.1 62 83.9
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 3.5e-18 97.8 51 94.1
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.5e-18 97.8 76 57.9
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.9e-18 97.1 90 60.0
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.7e-18 96.7 90 58.9
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 2.9e-17 94.7 51 92.2
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 4.3e-16 90.9 424 26.9
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 6.8e-14 83.6 56 76.8
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 2.0e-13 82.0 89 55.1
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.3e-09 68.6 59 57.6


User provided reference genes

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