Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.7e-115 417.5 202 100.0
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 6.8e-92 340.9 206 85.0
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.2e-59 233.8 210 60.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 3.0e-47 192.6 202 54.0
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 9.6e-46 187.6 201 51.2
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 7.1e-41 171.4 190 50.0
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.8e-36 156.8 125 56.8
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.0e-36 155.6 136 57.4
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 5.3e-36 155.2 123 59.3
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.3e-36 155.2 203 41.4
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 6.9e-36 154.8 125 60.0
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.2e-35 154.1 138 52.2
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.5e-35 153.7 136 56.6
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 3.4e-35 152.5 127 57.5
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 3.4e-35 152.5 145 52.4
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 4.4e-35 152.1 145 51.7
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 4.4e-35 152.1 145 51.7
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 5.8e-35 151.8 125 55.2
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.8e-35 151.8 132 53.0
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.8e-35 151.8 131 54.2
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 7.6e-35 151.4 125 56.8
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 9.9e-35 151.0 125 54.4
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.3e-34 150.6 133 53.4
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.3e-34 150.6 131 55.0
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.7e-34 150.2 155 51.0
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.7e-34 150.2 178 44.4
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 2.2e-34 149.8 123 53.7
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 3.8e-34 149.1 122 55.7
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 4.9e-34 148.7 123 55.3
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 6.4e-34 148.3 125 54.4
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 6.4e-34 148.3 173 46.8
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 6.4e-34 148.3 122 57.4
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 8.4e-34 147.9 129 53.5
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 8.4e-34 147.9 133 53.4
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 8.4e-34 147.9 133 53.4
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 8.4e-34 147.9 125 54.4
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.1e-33 147.5 133 53.4
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.1e-33 147.5 125 55.2
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.1e-33 147.5 173 45.1
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.1e-33 147.5 195 41.0
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.4e-33 147.1 129 52.7
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.4e-33 147.1 123 55.3
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 2.4e-33 146.4 125 54.4
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.2e-33 145.6 122 54.9
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 5.4e-33 145.2 128 50.8
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.4e-33 145.2 195 45.1
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 7.1e-33 144.8 125 53.6
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.1e-33 144.8 125 53.6
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 7.1e-33 144.8 123 52.0
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 7.1e-33 144.8 122 53.3
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 9.3e-33 144.4 125 52.8
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.3e-33 144.4 125 52.8
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.2e-32 144.1 125 53.6
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-32 143.7 122 53.3
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.6e-32 143.7 134 51.5
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.6e-32 143.7 122 54.9
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.1e-32 143.3 122 55.7
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.7e-32 142.9 144 50.0
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.7e-32 142.9 125 53.6
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 3.5e-32 142.5 123 54.5
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.6e-32 142.1 123 53.7
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.6e-32 142.1 123 56.1
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 6.0e-32 141.7 122 54.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 6.0e-32 141.7 125 52.0
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.0e-32 141.7 150 47.3
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 7.8e-32 141.4 122 52.5
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.0e-31 141.0 115 55.7
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.3e-31 140.6 122 54.1
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.3e-31 140.6 132 53.8
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.3e-31 140.6 125 53.6
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 2.3e-31 139.8 115 53.9
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 2.3e-31 139.8 125 49.6
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 3.9e-31 139.0 122 53.3
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.9e-31 139.0 129 51.2
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.9e-31 139.0 122 53.3
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.1e-31 138.7 122 52.5
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 5.1e-31 138.7 130 50.0
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.1e-31 138.7 140 47.1
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 6.6e-31 138.3 122 53.3
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 6.6e-31 138.3 132 49.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 6.6e-31 138.3 125 52.0
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 8.7e-31 137.9 138 50.0
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.1e-30 137.5 128 49.2
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.1e-30 137.5 135 50.4
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.5e-30 137.1 125 50.4
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.9e-30 136.7 135 48.1
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.5e-30 136.3 127 52.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.5e-30 136.3 127 52.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 2.5e-30 136.3 149 49.0
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 3.3e-30 136.0 189 40.2
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 3.3e-30 136.0 122 52.5
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 4.3e-30 135.6 132 51.5
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 4.3e-30 135.6 125 51.2
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 4.3e-30 135.6 138 44.9
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 4.3e-30 135.6 122 51.6
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 5.6e-30 135.2 126 50.0
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 7.3e-30 134.8 132 47.0
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 7.3e-30 134.8 132 47.0
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 7.3e-30 134.8 132 47.0
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.3e-30 134.8 214 39.7
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 9.6e-30 134.4 137 46.0
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 9.6e-30 134.4 202 39.1
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 9.6e-30 134.4 126 50.0
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.3e-29 134.0 127 51.2
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.3e-29 134.0 127 51.2
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.3e-29 134.0 127 51.2
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.3e-29 134.0 127 51.2
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.6e-29 133.7 127 53.5
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 1.6e-29 133.7 140 50.0
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.6e-29 133.7 128 51.6
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.6e-29 133.7 128 51.6
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.6e-29 132.5 135 47.4
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 3.6e-29 132.5 134 49.3
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 4.8e-29 132.1 131 53.4
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 4.8e-29 132.1 123 51.2
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 4.8e-29 132.1 129 49.6
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 6.2e-29 131.7 125 46.4
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.2e-29 131.7 127 48.8
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 8.1e-29 131.3 189 39.7
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.1e-28 131.0 150 48.0
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.1e-28 131.0 205 37.6
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.1e-28 131.0 131 48.9
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.1e-28 131.0 125 47.2
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.4e-28 130.6 123 50.4
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.4e-28 130.6 122 50.0
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.4e-28 130.6 122 50.0
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.8e-28 130.2 194 40.2
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 4.0e-28 129.0 179 44.7
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 9.0e-28 127.9 205 37.6
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 9.0e-28 127.9 125 48.0
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.2e-27 127.5 124 48.4
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.2e-27 127.5 125 44.0
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.0e-27 126.7 143 44.1
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.4e-27 125.9 128 48.4
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.4e-27 125.9 131 48.1
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.8e-27 125.2 125 47.2
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.8e-27 125.2 115 51.3
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 9.9e-27 124.4 116 50.9
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.3e-26 124.0 148 41.2
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-26 123.6 115 50.4
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.2e-26 123.2 115 51.3
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 2.9e-26 122.9 113 51.3
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.4e-25 120.6 127 45.7
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.2e-25 119.4 123 45.5
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-24 117.5 113 46.9
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.6e-24 117.1 122 45.9
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.6e-24 117.1 111 49.5
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.7e-24 116.3 146 41.1
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 3.5e-24 115.9 122 47.5
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.6e-24 115.5 111 48.6
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.6e-24 115.5 127 44.1
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 7.9e-24 114.8 86 57.0
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.3e-23 113.2 88 54.5
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 3.0e-23 112.8 119 45.4
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 5.1e-23 112.1 122 45.1
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 1.6e-21 107.1 183 37.7
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 2.4e-20 103.2 115 43.5
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.9e-20 101.7 78 55.1
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.9e-17 93.6 188 33.0
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.9e-17 93.6 82 54.9
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 4.2e-17 92.4 103 43.7
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.0e-16 88.6 96 45.8
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.9e-16 88.2 103 43.7
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.2e-13 78.6 87 43.7
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.4e-12 77.4 67 50.7
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-12 76.6 62 51.6
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 4.1e-12 75.9 130 36.2
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.1e-08 63.5 78 47.4
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 6.7e-07 58.5 55 52.7


User provided reference genes

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