Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000627 Carpinus fangiana HOM05D002948 ORTHO05D003577 1.9e-56 222.2 111 100.0
Haze_02235 Corylus avellana HOM05D002948 ORTHO05D003577 5.5e-19 97.8 78 66.7
CiPaw.06G127900 Carya illinoinensis HOM05D002948 ORTHO05D003577 3.5e-18 95.1 78 62.8
QL11p046480 Quercus lobata HOM05D002948 ORTHO05D003577 6.0e-18 94.4 78 62.8
Actinidia20472 Actinidia chinensis HOM05D002948 ORTHO05D003577 1.8e-17 92.8 78 61.5
Actinidia00576 Actinidia chinensis HOM05D002948 ORTHO05D003577 2.3e-17 92.4 78 60.3
Cfa005115 Carpinus fangiana HOM05D002948 ORTHO05D003577 3.0e-17 92.0 78 61.5
CiPaw.05G073700 Carya illinoinensis HOM05D002948 ORTHO05D003577 1.1e-16 90.1 78 60.3
Cc02_g16860 Coffea canephora HOM05D002948 ORTHO05D003577 5.7e-16 87.8 78 56.4
CANSAT11G0625 Cannabis sativa HOM05D002948 ORTHO05D003577 1.3e-15 86.7 78 56.4
CSS0006469 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 1.6e-15 86.3 78 55.1
CSS0040307 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 1.6e-15 86.3 78 55.1
PGR042G2860 Punica granatum HOM05D002948 ORTHO05D003577 3.7e-15 85.1 78 55.1
Eucgr.G01735 Eucalyptus grandis HOM05D002948 ORTHO05D003577 4.8e-15 84.7 77 57.1
FAN15G0007 Fragaria x ananassa HOM05D002948 ORTHO05D003577 8.2e-15 84.0 78 59.0
Lalb_Chr19g0138971 Lupinus albus HOM05D002948 ORTHO05D003577 1.4e-14 83.2 78 55.1
Atru.chr5.3152 Acer truncatum HOM05D002948 ORTHO05D003577 1.8e-14 82.8 79 53.2
Atru.chr5.3166 Acer truncatum HOM05D002948 ORTHO05D003577 1.8e-14 82.8 79 53.2
FAN27G1962 Fragaria x ananassa HOM05D002948 ORTHO05D003577 1.8e-14 82.8 78 57.7
Manes.11G081600 Manihot esculenta HOM05D002948 ORTHO05D003577 3.1e-14 82.0 78 55.1
CSS0028985 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 4.1e-14 81.6 109 44.0
ClCG11G003830 Citrullus lanatus HOM05D002948 ORTHO05D003577 5.3e-14 81.3 78 53.8
Prupe.8G083100 Prunus persica HOM05D002948 ORTHO05D003577 5.3e-14 81.3 78 55.1
FvH4_2g10570 Fragaria vesca HOM05D002948 ORTHO05D003577 6.9e-14 80.9 78 56.4
FAN24G2709 Fragaria x ananassa HOM05D002948 ORTHO05D003577 6.9e-14 80.9 78 56.4
CsaV3_2G015310 Cucumis sativus L. HOM05D002948 ORTHO05D003577 9.0e-14 80.5 78 53.8
RcHm_v2.0_Chr6g0268211 Rosa chinensis HOM05D002948 ORTHO05D003577 9.0e-14 80.5 78 57.7
TWI75G1141 Tripterygium wilfordii HOM05D002948 ORTHO05D003577 9.0e-14 80.5 78 53.8
Nn6g32257 Nelumbo nucifera HOM05D002948 ORTHO05D003577 1.2e-13 80.1 80 57.5
SalBow6G3895 Salvia bowleyana HOM05D002948 ORTHO05D003577 1.2e-13 80.1 79 53.2
TWI79G0104 Tripterygium wilfordii HOM05D002948 ORTHO05D003577 1.2e-13 80.1 80 55.0
CSS0024054 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 1.5e-13 79.7 109 43.1
Lalb_Chr03g0025331 Lupinus albus HOM05D002948 ORTHO05D003577 1.5e-13 79.7 78 52.6
MD10G1062500 Malus domestica HOM05D002948 ORTHO05D003577 1.5e-13 79.7 78 56.4
Rhsim11G0184100 Rhododendron simsii HOM05D002948 ORTHO05D003577 1.5e-13 79.7 78 53.8
MELO3C023359.2 Cucumis melo HOM05D002948 ORTHO05D003577 2.0e-13 79.3 78 52.6
Dinv23451 Davidia involucrata HOM05D002948 ORTHO05D003577 2.0e-13 79.3 78 53.8
Manes.04G083000 Manihot esculenta HOM05D002948 ORTHO05D003577 2.0e-13 79.3 109 41.3
arahy.Tifrunner.gnm1.ann1.YG2Q7Y Arachis hypogaea HOM05D002948 ORTHO05D003577 2.6e-13 79.0 78 48.7
FAN20G1999 Fragaria x ananassa HOM05D002948 ORTHO05D003577 2.6e-13 79.0 78 56.4
FvH4_7g04860 Fragaria vesca HOM05D002948 ORTHO05D003577 3.4e-13 78.6 78 55.1
FAN06G4601 Fragaria x ananassa HOM05D002948 ORTHO05D003577 3.4e-13 78.6 78 55.1
unitig_0.g48 Utricularia gibba HOM05D002948 ORTHO05D003577 4.5e-13 78.2 79 48.1
Sed0015136 Sechium edule HOM05D002948 ORTHO05D003577 5.9e-13 77.8 78 50.0
arahy.Tifrunner.gnm1.ann1.C8NIIA Arachis hypogaea HOM05D002948 ORTHO05D003577 1.0e-12 77.0 78 47.4
Hma1.2p1_0032F.1_g020070 Hydrangea macrophylla HOM05D002948 ORTHO05D003577 1.3e-12 76.6 78 55.1
MSTRG.16854 Avicennia marina HOM05D002948 ORTHO05D003577 1.7e-12 76.3 78 50.0
Lalb_Chr01g0002141 Lupinus albus HOM05D002948 ORTHO05D003577 2.2e-12 75.9 78 51.3
MD05G1055300 Malus domestica HOM05D002948 ORTHO05D003577 2.9e-12 75.5 78 52.6
Solyc10g054440.3 Solanum lycopersicum HOM05D002948 ORTHO05D003577 2.9e-12 75.5 78 51.3
PGSC0003DMG400026671 Solanum tuberosum HOM05D002948 ORTHO05D003577 2.9e-12 75.5 78 51.3
Thecc.04G202400 Theobroma cacao HOM05D002948 ORTHO05D003577 3.8e-12 75.1 77 50.6
TAR381G1534 Trochodendron aralioides HOM05D002948 ORTHO05D003577 3.8e-12 75.1 80 51.2
Migut.B00171 Erythranthe guttata HOM05D002948 ORTHO05D003577 5.0e-12 74.7 79 53.2
HanXRQChr15g0478321 Helianthus annuus HOM05D002948 ORTHO05D003577 5.0e-12 74.7 78 48.7
Lj5P189T22 Lonicera japonica HOM05D002948 ORTHO05D003577 6.5e-12 74.3 78 52.6
Oeu010049.1 Olea europaea HOM05D002948 ORTHO05D003577 8.5e-12 73.9 78 48.7
Duzib132G0750 Durio zibethinus HOM05D002948 ORTHO05D003577 1.4e-11 73.2 78 47.4
Potri.004G163300 Populus trichocarpa HOM05D002948 ORTHO05D003577 1.4e-11 73.2 78 47.4
Sopen10g024370 Solanum pennellii HOM05D002948 ORTHO05D003577 1.4e-11 73.2 78 50.0
TPR.G7028 Trifolium pratense HOM05D002948 ORTHO05D003577 1.4e-11 73.2 78 46.2
Aqoxy5G01475 Aquilegia oxysepala HOM05D002948 ORTHO05D003577 1.9e-11 72.8 80 50.0
Thecc.02G074500 Theobroma cacao HOM05D002948 ORTHO05D003577 1.9e-11 72.8 78 48.7
Nitab4.5_0001317g0070 Nicotiana tabacum HOM05D002948 ORTHO05D003577 2.5e-11 72.4 78 50.0
Nitab4.5_0010630g0010 Nicotiana tabacum HOM05D002948 ORTHO05D003577 3.2e-11 72.0 78 50.0
BcaB03g16368 Brassica carinata HOM05D002948 ORTHO05D003577 4.2e-11 71.6 77 51.9
CAN.G170.106 Capsicum annuum HOM05D002948 ORTHO05D003577 4.2e-11 71.6 79 53.2
Duzib248G1070 Durio zibethinus HOM05D002948 ORTHO05D003577 4.2e-11 71.6 78 47.4
Oeu055637.1 Olea europaea HOM05D002948 ORTHO05D003577 5.5e-11 71.2 78 48.7
PSO170G0240 Papaver somniferum HOM05D002948 ORTHO05D003577 5.5e-11 71.2 80 51.2
PSO210G1300 Papaver somniferum HOM05D002948 ORTHO05D003577 5.5e-11 71.2 80 51.2
HanXRQChr17g0543721 Helianthus annuus HOM05D002948 ORTHO05D003577 7.2e-11 70.9 78 48.7
Medtr4g072020 Medicago truncatula HOM05D002948 ORTHO05D003577 7.2e-11 70.9 78 44.9
Nn5g29243 Nelumbo nucifera HOM05D002948 ORTHO05D003577 7.2e-11 70.9 80 51.2
AUR62016840 Chenopodium quinoa HOM05D002948 ORTHO05D003577 9.4e-11 70.5 79 48.1
Ciclev10027873m.g Citrus clementina HOM05D002948 ORTHO05D003577 9.4e-11 70.5 79 46.8
Lj1g0012396 Lotus japonicus HOM05D002948 ORTHO05D003577 9.4e-11 70.5 81 45.7
TAR376G0314 Trochodendron aralioides HOM05D002948 ORTHO05D003577 1.2e-10 70.1 78 52.6
EL10Ac9g21627 Beta vulgaris HOM05D002948 ORTHO05D003577 1.6e-10 69.7 79 48.1
COL.COLO4_00023 Corchorus olitorius HOM05D002948 ORTHO05D003577 1.6e-10 69.7 78 47.4
MSTRG.5424 Avicennia marina HOM05D002948 ORTHO05D003577 2.1e-10 69.3 78 48.7
AUR62010378 Chenopodium quinoa HOM05D002948 ORTHO05D003577 2.1e-10 69.3 79 46.8
Peaxi162Scf00016g00007 Petunia axillaris HOM05D002948 ORTHO05D003577 2.1e-10 69.3 79 50.6
THA.LOC104804343 Tarenaya hassleriana HOM05D002948 ORTHO05D003577 2.1e-10 69.3 78 48.7
Sc18g0005400 Simmondsia chinensis HOM05D002948 ORTHO05D003577 2.7e-10 68.9 78 44.9
Oeu002952.1 Olea europaea HOM05D002948 ORTHO05D003577 3.6e-10 68.6 78 50.0
Sc08g0000930 Simmondsia chinensis HOM05D002948 ORTHO05D003577 3.6e-10 68.6 79 49.4
TAR628G1095 Trochodendron aralioides HOM05D002948 ORTHO05D003577 3.6e-10 68.6 80 52.5
Thhalv10022578m.g Eutrema salsugineum HOM05D002948 ORTHO05D003577 4.6e-10 68.2 77 50.6
Lsat_1_v5_gn_4_67421 Lactuca sativa HOM05D002948 ORTHO05D003577 4.6e-10 68.2 78 44.9
AT2G16500 Arabidopsis thaliana HOM05D002948 ORTHO05D003577 6.1e-10 67.8 77 50.6
Duzib052G1212 Durio zibethinus HOM05D002948 ORTHO05D003577 6.1e-10 67.8 78 47.4
ECA240G1699 Erigeron canadensis HOM05D002948 ORTHO05D003577 7.9e-10 67.4 78 46.2
MBI05_g16275_MAGBIO Magnolia biondii HOM05D002948 ORTHO05D003577 7.9e-10 67.4 80 51.2
PGSC0003DMG400001662 Solanum tuberosum HOM05D002948 ORTHO05D003577 1.0e-09 67.0 79 50.6
Gohir.A13G091000 Gossypium hirsutum HOM05D002948 ORTHO05D003577 1.8e-09 66.2 78 46.2
Nitab4.5_0005932g0030 Nicotiana tabacum HOM05D002948 ORTHO05D003577 1.8e-09 66.2 80 51.2
Psat7g140360 Pisum sativum HOM05D002948 ORTHO05D003577 1.8e-09 66.2 78 43.6
Sopen01g052570 Solanum pennellii HOM05D002948 ORTHO05D003577 1.8e-09 66.2 79 49.4
Gorai.002G149300 Gossypium raimondii HOM05D002948 ORTHO05D003577 2.3e-09 65.9 78 44.9
Carub.0003s3028 Capsella rubella HOM05D002948 ORTHO05D003577 3.0e-09 65.5 77 49.4
CARHR106720 Cardamine hirsuta HOM05D002948 ORTHO05D003577 3.0e-09 65.5 77 49.4
Ca_20935_v3 Cicer arietinum L. HOM05D002948 ORTHO05D003577 3.0e-09 65.5 78 41.0
Sabra04G0109600 Salix brachista HOM05D002948 ORTHO05D003577 3.0e-09 65.5 80 46.2
Nitab4.5_0005266g0020 Nicotiana tabacum HOM05D002948 ORTHO05D003577 5.1e-09 64.7 80 50.0
MSTRG.20037 Avicennia marina HOM05D002948 ORTHO05D003577 6.7e-09 64.3 78 44.9
Sp3g29770 Schrenkiella parvula HOM05D002948 ORTHO05D003577 6.7e-09 64.3 77 48.1
SGA_v2.0_scaffold207G41879 Striga asiatica HOM05D002948 ORTHO05D003577 6.7e-09 64.3 80 46.2
Gohir.D13G096600 Gossypium hirsutum HOM05D002948 ORTHO05D003577 8.8e-09 63.9 78 43.6
THA.LOC104807291 Tarenaya hassleriana HOM05D002948 ORTHO05D003577 8.8e-09 63.9 78 46.2
THA.LOC104820175 Tarenaya hassleriana HOM05D002948 ORTHO05D003577 8.8e-09 63.9 78 47.4
AL3G52690 Arabidopsis lyrata HOM05D002948 ORTHO05D003577 1.5e-08 63.2 77 46.8
Lsat_1_v5_gn_3_44201 Lactuca sativa HOM05D002948 ORTHO05D003577 1.5e-08 63.2 78 42.3
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 1.9e-08 62.8 79 45.6
CDE02G0749 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.9e-08 62.8 79 48.1
CDE09G0099 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.9e-08 62.8 79 48.1
unitig_60.g25437 Utricularia gibba HOM05D002948 ORTHO05D003577 3.3e-08 62.0 79 38.0
ATR0149G028 Amborella trichopoda HOM05D002948 ORTHO05D003577 4.3e-08 61.6 78 43.6
HPP92_020655 Vanilla planifolia HOM05D002948 ORTHO05D003577 1.3e-07 60.1 78 44.9
Lj3g0025349 Lotus japonicus HOM05D002948 ORTHO05D003577 2.2e-07 59.3 80 45.0
AT4G34710 Arabidopsis thaliana HOM05D002948 ORTHO05D003577 3.7e-07 58.5 78 46.2
Glyma.06G007500 Glycine max HOM05D002948 ORTHO05D003577 6.3e-07 57.8 81 43.2
Gohir.A04G123600 Gossypium hirsutum HOM05D002948 ORTHO05D003577 6.3e-07 57.8 78 43.6
Gohir.D04G165600 Gossypium hirsutum HOM05D002948 ORTHO05D003577 6.3e-07 57.8 78 43.6
Aa31LG8G13820 Aethionema arabicum HOM05D002948 ORTHO05D003577 8.2e-07 57.4 79 40.5
Sp7g32490 Schrenkiella parvula HOM05D002948 ORTHO05D003577 8.2e-07 57.4 78 44.9
Gorai.012G154100 Gossypium raimondii HOM05D002948 ORTHO05D003577 1.1e-06 57.0 78 43.6
AL7G16490 Arabidopsis lyrata HOM05D002948 ORTHO05D003577 1.4e-06 56.6 78 44.9
A08p16630 Brassica napus HOM05D002948 ORTHO05D003577 4.1e-06 55.1 81 45.7
BraA08t33628Z Brassica rapa HOM05D002948 ORTHO05D003577 4.1e-06 55.1 81 45.7
Thhalv10024529m.g Eutrema salsugineum HOM05D002948 ORTHO05D003577 4.1e-06 55.1 81 43.2
Glyma.04G007700 Glycine max HOM05D002948 ORTHO05D003577 5.3e-06 54.7 80 38.8
Ah.01g018720 Amaranthus hybridus HOM05D002948 ORTHO05D003577 6.9e-06 54.3 79 41.8
Cpa.g.sc150.13 Carica papaya HOM05D002948 ORTHO05D003577 6.9e-06 54.3 78 37.2


User provided reference genes

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