Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000493 Carpinus fangiana HOM05D005621 ORTHO05D007248 3.8e-143 511.5 268 100.0
Haze_06422 Corylus avellana HOM05D005621 ORTHO05D007248 8.6e-119 430.6 228 99.1
CiPaw.09G061400 Carya illinoinensis HOM05D005621 ORTHO05D007248 5.1e-95 351.7 228 84.2
QL05p041319 Quercus lobata HOM05D005621 ORTHO05D007248 9.6e-94 347.4 230 81.3
Manes.16G029300 Manihot esculenta HOM05D005621 ORTHO05D007248 6.0e-80 301.6 227 74.0
CsaV3_6G050190 Cucumis sativus L. HOM05D005621 ORTHO05D007248 3.4e-75 285.8 227 71.4
Cpa.g.sc464.3 Carica papaya HOM05D005621 ORTHO05D007248 7.6e-75 284.6 231 72.7
MELO3C007277.2 Cucumis melo HOM05D005621 ORTHO05D007248 1.7e-74 283.5 227 71.4
Potri.004G045700 Populus trichocarpa HOM05D005621 ORTHO05D007248 1.9e-73 280.0 229 68.6
Sabra04G0028500 Salix brachista HOM05D005621 ORTHO05D007248 1.9e-73 280.0 229 67.7
Glyma.07G198500 Glycine max HOM05D005621 ORTHO05D007248 3.5e-72 275.8 225 69.8
Thecc.06G184600 Theobroma cacao HOM05D005621 ORTHO05D007248 4.6e-72 275.4 203 75.4
ClCG01G023060 Citrullus lanatus HOM05D005621 ORTHO05D007248 6.0e-72 275.0 227 69.2
Gorai.010G256400 Gossypium raimondii HOM05D005621 ORTHO05D007248 6.0e-72 275.0 227 68.7
Nitab4.5_0013984g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 1.3e-71 273.9 230 69.1
Prupe.4G049400 Prunus persica HOM05D005621 ORTHO05D007248 1.3e-71 273.9 231 69.7
Nn1g06478 Nelumbo nucifera HOM05D005621 ORTHO05D007248 1.8e-71 273.5 241 65.1
MSTRG.14706 Avicennia marina HOM05D005621 ORTHO05D007248 2.3e-71 273.1 232 68.5
GSVIVG01021083001 Vitis vinifera HOM05D005621 ORTHO05D007248 2.3e-71 273.1 250 62.8
Nitab4.5_0005745g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 3.0e-71 272.7 228 68.9
CDE02G0355 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 5.1e-71 271.9 229 68.6
Glyma.13G177900 Glycine max HOM05D005621 ORTHO05D007248 5.1e-71 271.9 231 67.1
TWI63G1165 Tripterygium wilfordii HOM05D005621 ORTHO05D007248 5.1e-71 271.9 221 69.7
FvH4_3g08970 Fragaria vesca HOM05D005621 ORTHO05D007248 6.7e-71 271.6 234 69.7
Gohir.A06G211100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 6.7e-71 271.6 227 68.3
Sed0019345 Sechium edule HOM05D005621 ORTHO05D007248 6.7e-71 271.6 231 67.1
FAN16G3294 Fragaria x ananassa HOM05D005621 ORTHO05D007248 4.3e-70 268.9 233 69.1
Dinv40577 Davidia involucrata HOM05D005621 ORTHO05D007248 5.6e-70 268.5 236 66.5
FAN21G0060 Fragaria x ananassa HOM05D005621 ORTHO05D007248 7.4e-70 268.1 233 69.1
Lj4g0015429 Lotus japonicus HOM05D005621 ORTHO05D007248 9.6e-70 267.7 230 68.7
Eucgr.D00609 Eucalyptus grandis HOM05D005621 ORTHO05D007248 1.3e-69 267.3 225 67.6
Lalb_Chr16g0383871 Lupinus albus HOM05D005621 ORTHO05D007248 1.3e-69 267.3 239 64.4
Oeu029361.1 Olea europaea HOM05D005621 ORTHO05D007248 1.3e-69 267.3 229 66.8
MD00G1115700 Malus domestica HOM05D005621 ORTHO05D007248 2.1e-69 266.5 228 67.5
CDE05G0202 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 2.8e-69 266.2 228 67.1
FAN11G2270 Fragaria x ananassa HOM05D005621 ORTHO05D007248 3.7e-69 265.8 242 67.4
MD10G1292500 Malus domestica HOM05D005621 ORTHO05D007248 8.2e-69 264.6 230 67.4
CANSAT35G1861 Cannabis sativa HOM05D005621 ORTHO05D007248 1.1e-68 264.2 228 66.7
Nitab4.5_0007329g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 1.1e-68 264.2 230 66.5
Lalb_Chr09g0327691 Lupinus albus HOM05D005621 ORTHO05D007248 1.4e-68 263.8 227 67.4
PGR004G2009 Punica granatum HOM05D005621 ORTHO05D007248 1.4e-68 263.8 246 64.2
Lsat_1_v5_gn_7_21701 Lactuca sativa HOM05D005621 ORTHO05D007248 1.8e-68 263.5 227 67.0
Peaxi162Scf02261g00011 Petunia axillaris HOM05D005621 ORTHO05D007248 1.8e-68 263.5 223 66.8
SalBow7G0434 Salvia bowleyana HOM05D005621 ORTHO05D007248 3.1e-68 262.7 228 67.5
SalBow7G3926 Salvia bowleyana HOM05D005621 ORTHO05D007248 3.1e-68 262.7 228 67.5
TAR624G0986 Trochodendron aralioides HOM05D005621 ORTHO05D007248 4.0e-68 262.3 241 62.7
CAN.G529.17 Capsicum annuum HOM05D005621 ORTHO05D007248 9.0e-68 261.2 226 64.6
Gohir.D05G163500 Gossypium hirsutum HOM05D005621 ORTHO05D007248 9.0e-68 261.2 228 64.9
HanXRQChr09g0253381 Helianthus annuus HOM05D005621 ORTHO05D007248 1.2e-67 260.8 227 67.4
Migut.H01481 Erythranthe guttata HOM05D005621 ORTHO05D007248 1.5e-67 260.4 233 64.4
Gohir.D06G210100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 1.5e-67 260.4 228 66.2
Gohir.A05G160800 Gossypium hirsutum HOM05D005621 ORTHO05D007248 2.6e-67 259.6 228 64.9
Potri.011G053900 Populus trichocarpa HOM05D005621 ORTHO05D007248 2.6e-67 259.6 238 65.5
PGSC0003DMG400029704 Solanum tuberosum HOM05D005621 ORTHO05D007248 3.4e-67 259.2 236 64.8
MBI18_g13183_MAGBIO Magnolia biondii HOM05D005621 ORTHO05D007248 4.5e-67 258.8 226 66.8
Hma1.2p1_0208F.1_g088250 Hydrangea macrophylla HOM05D005621 ORTHO05D007248 5.8e-67 258.5 242 63.6
VMungo0251G0522 Vigna mungo HOM05D005621 ORTHO05D007248 5.8e-67 258.5 228 64.9
Gorai.009G168600 Gossypium raimondii HOM05D005621 ORTHO05D007248 1.0e-66 257.7 228 64.9
Sopen02g022830 Solanum pennellii HOM05D005621 ORTHO05D007248 1.7e-66 256.9 226 65.9
COL.COLO4_31445 Corchorus olitorius HOM05D005621 ORTHO05D007248 2.2e-66 256.5 172 76.7
FAN25G0915 Fragaria x ananassa HOM05D005621 ORTHO05D007248 2.2e-66 256.5 188 74.5
Phvul.002G229700 Phaseolus vulgaris HOM05D005621 ORTHO05D007248 2.2e-66 256.5 228 63.2
Solyc02g077990.3 Solanum lycopersicum HOM05D005621 ORTHO05D007248 4.9e-66 255.4 226 65.5
Cc02_g13570 Coffea canephora HOM05D005621 ORTHO05D007248 6.5e-66 255.0 228 61.8
THA.LOC104814219 Tarenaya hassleriana HOM05D005621 ORTHO05D007248 8.4e-66 254.6 234 66.7
SGA_v2.0_scaffold109G31092 Striga asiatica HOM05D005621 ORTHO05D007248 1.1e-65 254.2 236 64.4
Nitab4.5_0012909g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 1.4e-65 253.8 214 66.4
PSO541G5241 Papaver somniferum HOM05D005621 ORTHO05D007248 4.2e-65 252.3 237 61.6
PSO675G9131 Papaver somniferum HOM05D005621 ORTHO05D007248 4.2e-65 252.3 237 61.6
AUR62017033 Chenopodium quinoa HOM05D005621 ORTHO05D007248 5.5e-65 251.9 227 62.1
Dinv17326 Davidia involucrata HOM05D005621 ORTHO05D007248 7.1e-65 251.5 247 61.5
AL4G29560 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 2.1e-64 250.0 231 65.4
AUR62014837 Chenopodium quinoa HOM05D005621 ORTHO05D007248 2.1e-64 250.0 227 62.1
Atru.chr10.1848 Acer truncatum HOM05D005621 ORTHO05D007248 4.6e-64 248.8 169 76.9
Ah.09g237450 Amaranthus hybridus HOM05D005621 ORTHO05D007248 4.6e-64 248.8 231 63.6
Carub.0004s1547 Capsella rubella HOM05D005621 ORTHO05D007248 6.0e-64 248.4 231 65.4
Ah.14g089540 Amaranthus hybridus HOM05D005621 ORTHO05D007248 1.3e-63 247.3 228 62.7
AT2G33800 Arabidopsis thaliana HOM05D005621 ORTHO05D007248 1.3e-63 247.3 231 65.4
A04p26030 Brassica napus HOM05D005621 ORTHO05D007248 3.0e-63 246.1 232 65.5
Ciclev10016057m.g Citrus clementina HOM05D005621 ORTHO05D007248 6.7e-63 245.0 235 64.7
Ca_18557_v3 Cicer arietinum L. HOM05D005621 ORTHO05D007248 1.5e-62 243.8 234 62.8
Sc05g0007560 Simmondsia chinensis HOM05D005621 ORTHO05D007248 1.5e-62 243.8 226 64.2
Medtr4g088615 Medicago truncatula HOM05D005621 ORTHO05D007248 1.9e-62 243.4 227 62.1
Aqoxy1G02371 Aquilegia oxysepala HOM05D005621 ORTHO05D007248 5.7e-62 241.9 234 59.4
Sp4g16190 Schrenkiella parvula HOM05D005621 ORTHO05D007248 9.7e-62 241.1 233 64.4
EL10Ac8g20402 Beta vulgaris HOM05D005621 ORTHO05D007248 1.3e-61 240.7 232 60.3
C04p63370 Brassica napus HOM05D005621 ORTHO05D007248 1.3e-61 240.7 233 63.9
BraA04t18105Z Brassica rapa HOM05D005621 ORTHO05D007248 1.6e-61 240.4 232 64.2
DCAR_004062 Daucus carota HOM05D005621 ORTHO05D007248 1.6e-61 240.4 232 62.5
Aa31sc652G50 Aethionema arabicum HOM05D005621 ORTHO05D007248 3.7e-61 239.2 227 64.8
Aa31sc652G80 Aethionema arabicum HOM05D005621 ORTHO05D007248 3.7e-61 239.2 227 64.8
ATR0217G013 Amborella trichopoda HOM05D005621 ORTHO05D007248 3.7e-61 239.2 228 62.3
BolC4t27812H Brassica oleracea HOM05D005621 ORTHO05D007248 4.8e-61 238.8 232 63.8
CARHR127910 Cardamine hirsuta HOM05D005621 ORTHO05D007248 6.3e-61 238.4 233 63.5
ECA236G3692 Erigeron canadensis HOM05D005621 ORTHO05D007248 5.3e-60 235.3 224 60.7
Duzib235G0013 Durio zibethinus HOM05D005621 ORTHO05D007248 6.9e-60 235.0 231 64.1
RcHm_v2.0_Chr5g0008741 Rosa chinensis HOM05D005621 ORTHO05D007248 4.5e-59 232.3 228 61.0
Hund21218 Selenicereus undatus HOM05D005621 ORTHO05D007248 4.5e-59 232.3 226 59.7
Cfa000499 Carpinus fangiana HOM05D000007 ORTHO05D000039 7.7e-59 231.5 157 81.5
unitig_0.g964 Utricularia gibba HOM05D005621 ORTHO05D007248 1.3e-58 230.7 145 82.1
Lj2A290T34 Lonicera japonica HOM05D005621 ORTHO05D007248 3.2e-57 226.1 165 72.1
Psat7g115360 Pisum sativum HOM05D005621 ORTHO05D007248 2.1e-56 223.4 232 58.6
TPR.G16335 Trifolium pratense HOM05D005621 ORTHO05D007248 4.6e-56 222.2 233 57.9
Actinidia16560 Actinidia chinensis HOM05D005621 ORTHO05D007248 1.4e-44 184.1 238 51.3
vmacro15918 Vaccinium macrocarpon HOM05D005621 ORTHO05D007248 1.2e-40 171.0 261 46.7
Rhsim02G0132300 Rhododendron simsii HOM05D005621 ORTHO05D007248 1.8e-39 167.2 249 48.2
BcaC02g07768 Brassica carinata HOM05D005621 ORTHO05D007248 7.0e-36 155.2 107 77.6
FvH4_2g34180 Fragaria vesca HOM05D005621 ORTHO05D007248 7.7e-35 151.8 97 81.4
FAN24G2187 Fragaria x ananassa HOM05D005621 ORTHO05D007248 7.7e-35 151.8 97 81.4
Os03g0452300 Oryza sativa ssp. japonica HOM05D005621 ORTHO05D007248 7.7e-35 151.8 254 41.7
Pp3c1_5050 Physcomitrium patens HOM05D005621 ORTHO05D007248 3.6e-32 142.9 141 58.9
Zm00001eb043240 Zea mays HOM05D005621 ORTHO05D007248 6.1e-32 142.1 157 49.7
Pp3c7_18380 Physcomitrium patens HOM05D005621 ORTHO05D007248 1.4e-31 141.0 142 56.3
Pp3c11_10680 Physcomitrium patens HOM05D005621 ORTHO05D007248 3.0e-31 139.8 125 60.0
CBR_g50385 Chara braunii HOM05D005621 ORTHO05D007248 4.4e-30 136.0 140 55.0
Mapoly0008s0189 Marchantia polymorpha HOM05D005621 ORTHO05D007248 9.7e-30 134.8 146 55.5
SEGI_11788 Sequoiadendron giganteum HOM05D005621 ORTHO05D007248 1.7e-29 134.0 135 53.3
AagrBONN_evm.TU.Sc2ySwM_344.1949 Anthoceros agrestis HOM05D005621 ORTHO05D007248 3.1e-28 129.8 142 54.9
Cc02_g13560 Coffea canephora HOM05D005621 ORTHO05D007248 9.1e-28 128.3 122 57.4
AL4G11520 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 4.2e-25 119.4 74 85.1
HPP92_014187 Vanilla planifolia HOM05D005621 ORTHO05D007248 3.7e-21 106.3 157 46.5
VMungo0647G2378 Vigna mungo HOM05D005621 ORTHO05D007248 1.4e-20 104.4 96 57.3
MCO06G207 Micromonas commoda HOM05D005621 ORTHO05D007248 9.5e-17 91.7 77 62.3
PRCOL_00000384 Prasinoderma coloniale HOM05D005621 ORTHO05D007248 3.6e-16 89.7 86 50.0
Cre16.g659950 Chlamydomonas reinhardtii HOM05D005621 ORTHO05D007248 1.3e-10 71.2 73 46.6
FvH4_1g06340 Fragaria vesca HOM05D005621 ORTHO05D045558 2.6e-06 57.0 144 32.6
FAN19G2963 Fragaria x ananassa HOM05D005621 ORTHO05D045558 5.8e-06 55.8 144 31.9


User provided reference genes

Program Settings