Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 5.9e-101 370.9 197 100.0
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 5.4e-70 268.1 201 75.1
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 7.1e-70 267.7 197 74.6
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 3.5e-69 265.4 194 73.2
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.0e-68 263.8 197 74.1
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.3e-68 263.5 199 73.9
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 5.1e-68 261.5 195 71.8
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 5.1e-68 261.5 194 71.6
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 6.6e-68 261.2 197 74.1
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 6.6e-68 261.2 197 74.1
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 6.6e-68 261.2 197 74.1
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.5e-67 260.0 197 73.6
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 3.3e-67 258.8 195 72.3
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 3.3e-67 258.8 201 71.6
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 9.6e-67 257.3 197 72.6
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 9.6e-67 257.3 197 71.1
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 1.3e-66 256.9 198 71.7
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.6e-66 256.5 203 72.9
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 6.2e-66 254.6 195 70.8
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 8.1e-66 254.2 197 72.1
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 8.1e-66 254.2 197 71.6
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.4e-65 253.4 197 71.6
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 5.3e-65 251.5 205 69.3
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 6.9e-65 251.1 197 73.1
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 9.0e-65 250.8 194 71.1
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 1.2e-64 250.4 200 73.0
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.5e-64 250.0 204 70.1
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 4.4e-64 248.4 198 70.2
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 5.8e-64 248.1 194 72.2
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 7.6e-64 247.7 202 71.3
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 7.6e-64 247.7 198 70.7
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 7.6e-64 247.7 200 71.0
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.7e-63 246.5 198 69.7
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 2.2e-63 246.1 202 69.8
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 1.1e-62 243.8 197 68.5
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.4e-62 243.4 194 70.1
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.2e-62 241.9 199 69.3
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 5.4e-62 241.5 197 68.0
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 7.1e-62 241.1 197 71.1
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 9.3e-62 240.7 196 69.9
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 1.2e-61 240.4 195 68.7
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.2e-61 240.4 200 69.5
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 2.1e-61 239.6 205 67.3
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 2.7e-61 239.2 197 69.5
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 2.7e-61 239.2 201 69.7
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 7.8e-61 237.7 199 67.3
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 1.0e-60 237.3 201 68.2
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 3.9e-60 235.3 196 68.9
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 8.7e-60 234.2 204 65.7
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 2.5e-59 232.6 200 68.0
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 2.1e-58 229.6 203 66.5
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 4.8e-58 228.4 205 66.3
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.4e-57 226.9 199 65.8
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 2.4e-57 226.1 199 63.3
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 4.0e-57 225.3 200 66.0
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.3e-57 224.9 203 64.5
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 6.9e-57 224.6 202 64.4
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 9.0e-57 224.2 202 64.9
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.2e-56 223.8 202 65.3
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 1.2e-56 223.8 204 63.7
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-56 223.8 203 63.5
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-56 223.8 204 63.7
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.2e-56 223.8 209 67.5
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.5e-56 223.4 203 63.5
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.5e-56 223.4 203 63.5
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 4.5e-56 221.9 206 64.6
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 5.8e-56 221.5 199 64.3
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 5.8e-56 221.5 199 64.3
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 7.6e-56 221.1 196 64.3
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 9.9e-56 220.7 206 63.1
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 1.7e-55 219.9 195 65.1
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 8.4e-55 217.6 194 61.3
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 8.4e-55 217.6 197 61.9
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.1e-54 217.2 199 63.8
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 9.3e-54 214.2 204 62.7
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 9.3e-54 214.2 199 62.8
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 4.6e-53 211.8 200 63.5
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 6.0e-53 211.5 199 62.8
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.0e-52 210.7 165 72.7
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.0e-52 210.7 203 65.0
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.8e-52 209.9 208 61.1
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.0e-52 209.1 201 61.7
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.0e-52 209.1 201 62.7
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 3.0e-52 209.1 211 60.2
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 5.1e-52 208.4 196 62.8
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 6.7e-52 208.0 202 62.9
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 6.7e-52 208.0 199 60.3
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.5e-51 206.8 202 61.9
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 2.5e-51 206.1 196 59.2
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 3.3e-51 205.7 206 60.2
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 4.8e-50 201.8 194 60.3
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 4.8e-50 201.8 214 57.5
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 6.2e-50 201.4 199 60.8
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 8.1e-50 201.1 205 59.5
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.1e-49 200.7 202 59.4
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 3.1e-49 199.1 203 59.6
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 9.0e-49 197.6 202 60.9
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 1.2e-48 197.2 205 59.5
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 1.5e-48 196.8 206 59.2
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 1.5e-48 196.8 206 59.2
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.0e-48 196.4 202 62.4
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 4.5e-48 195.3 211 58.8
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 5.8e-48 194.9 199 59.3
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 7.6e-48 194.5 198 59.1
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.3e-47 193.7 199 58.8
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.7e-47 193.4 211 57.8
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 4.9e-47 191.8 213 57.3
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 4.9e-47 191.8 213 57.3
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 4.9e-47 191.8 213 57.3
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 8.4e-47 191.0 210 56.2
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 8.4e-47 191.0 210 55.7
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 1.4e-46 190.3 208 58.2
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.9e-46 189.9 208 57.7
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.9e-46 189.9 208 57.7
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.9e-46 189.9 209 57.9
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 7.1e-46 188.0 175 60.6
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 6.0e-45 184.9 204 56.9
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 6.0e-45 184.9 203 56.7
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 2.3e-44 183.0 207 54.6
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 2.3e-44 183.0 204 56.4
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 6.7e-44 181.4 198 57.6
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 8.7e-44 181.0 204 55.9
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 8.7e-44 181.0 199 58.8
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 8.7e-44 181.0 199 55.3
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 1.5e-43 180.3 199 57.3
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 2.8e-42 176.0 204 54.9
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 6.2e-42 174.9 207 55.1
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 1.8e-41 173.3 200 54.5
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 5.3e-41 171.8 200 56.0
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 4.5e-40 168.7 198 51.5
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 7.1e-38 161.4 191 50.8
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 2.7e-37 159.5 204 48.5
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 4.3e-35 152.1 196 48.0
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 5.7e-35 151.8 113 69.9
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.3e-34 150.6 175 52.6
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 4.8e-34 148.7 203 47.8
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.1e-33 147.5 180 48.3
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 1.2e-32 144.1 202 47.5
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 1.5e-32 143.7 202 47.0
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 3.4e-32 142.5 177 53.7
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.0e-31 141.0 167 46.1
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 3.8e-31 139.0 169 46.7
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.0e-31 138.7 135 52.6
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 4.2e-30 135.6 118 66.9
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 5.5e-30 135.2 138 52.2
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 2.4e-25 119.8 157 45.9
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 6.5e-23 111.7 127 50.4
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 5.5e-22 108.6 76 71.1
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.0e-20 102.8 193 42.5
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 3.9e-20 102.4 157 43.9
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 2.0e-19 100.1 160 48.8
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.7e-19 98.6 126 46.8
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 7.4e-19 98.2 195 42.1
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 9.7e-19 97.8 126 47.6
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.3e-18 97.4 99 53.5
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 1.3e-18 97.4 88 65.9
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 2.8e-18 96.3 138 44.9
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.6e-16 89.7 144 43.1
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 1.1e-14 84.3 120 43.3
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 4.1e-09 65.9 137 35.8
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 1.3e-07 60.8 116 34.5


User provided reference genes

Program Settings