Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g15940 Coffea canephora HOM05D003359 ORTHO05D020488 3.6e-123 444.9 219 100.0
Atru.chr11.2161 Acer truncatum HOM05D003359 ORTHO05D004472 6.9e-66 254.6 218 56.9
Actinidia37443 Actinidia chinensis HOM05D003359 ORTHO05D004472 1.5e-65 253.4 217 58.5
CSS0009419 Camellia sinensis var. sinensis HOM05D003359 ORTHO05D004472 3.4e-65 252.3 219 56.6
QL03p057173 Quercus lobata HOM05D003359 ORTHO05D004472 1.0e-64 250.8 218 56.4
Oeu057546.1 Olea europaea HOM05D003359 ORTHO05D004472 1.3e-64 250.4 220 58.6
GSVIVG01000554001 Vitis vinifera HOM05D003359 ORTHO05D005275 1.9e-63 246.5 218 55.0
CANSAT01G0511 Cannabis sativa HOM05D003359 ORTHO05D004472 2.5e-63 246.1 219 54.8
CiPaw.05G179800 Carya illinoinensis HOM05D003359 ORTHO05D004472 1.3e-61 240.4 218 54.1
Cfa009233 Carpinus fangiana HOM05D003359 ORTHO05D004472 1.1e-60 237.3 221 53.8
TAR622G1186 Trochodendron aralioides HOM05D003359 ORTHO05D004472 3.3e-60 235.7 220 53.2
Ciclev10030938m.g Citrus clementina HOM05D003359 ORTHO05D004472 4.3e-60 235.3 218 52.8
MSTRG.7949 Avicennia marina HOM05D003359 ORTHO05D004472 2.1e-59 233.0 218 54.1
Prupe.1G247000 Prunus persica HOM05D003359 ORTHO05D004472 2.1e-59 233.0 220 52.7
RcHm_v2.0_Chr4g0433401 Rosa chinensis HOM05D003359 ORTHO05D004472 2.1e-59 233.0 220 51.8
Potri.010G048300 Populus trichocarpa HOM05D003359 ORTHO05D004472 4.1e-58 228.8 221 53.8
FAN07G2501 Fragaria x ananassa HOM05D003359 ORTHO05D004472 6.9e-58 228.0 216 51.9
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 9.0e-58 227.6 217 52.5
FvH4_4g25930 Fragaria vesca HOM05D003359 ORTHO05D004472 3.4e-57 225.7 216 51.4
Cpa.g.sc33.46 Carica papaya HOM05D003359 ORTHO05D004472 7.6e-57 224.6 216 54.6
QL03p057181 Quercus lobata HOM05D003359 ORTHO05D004472 1.0e-56 224.2 218 51.4
Duzib251G0748 Durio zibethinus HOM05D003359 ORTHO05D004472 1.3e-56 223.8 218 52.8
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 2.2e-56 223.0 218 50.9
FAN12G3248 Fragaria x ananassa HOM05D003359 ORTHO05D004472 2.9e-56 222.6 216 50.9
Gohir.A03G133100 Gossypium hirsutum HOM05D003359 ORTHO05D004472 3.8e-56 222.2 218 52.8
FAN12G2341 Fragaria x ananassa HOM05D003359 ORTHO05D004472 6.5e-56 221.5 216 50.0
Lsat_1_v5_gn_8_152721 Lactuca sativa HOM05D003359 ORTHO05D004472 8.5e-56 221.1 212 51.4
Potri.008G185300 Populus trichocarpa HOM05D003359 ORTHO05D004472 2.5e-55 219.5 217 52.1
Nn3g16675 Nelumbo nucifera HOM05D003359 ORTHO05D004472 5.5e-55 218.4 216 51.4
MBI19_g09304_MAGBIO Magnolia biondii HOM05D003359 ORTHO05D004472 7.2e-55 218.0 220 48.6
Eucgr.H02477 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.2e-54 217.2 221 50.7
Gohir.D02G157400 Gossypium hirsutum HOM05D003359 ORTHO05D004472 1.2e-54 217.2 218 51.8
HanXRQChr08g0208381 Helianthus annuus HOM05D003359 ORTHO05D004472 1.2e-54 217.2 220 50.5
Glyma.08G131400 Glycine max HOM05D003359 ORTHO05D004472 1.6e-54 216.9 222 49.5
Carub.0005s0430 Capsella rubella HOM05D003359 ORTHO05D004472 2.1e-54 216.5 219 50.2
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 2.1e-54 216.5 217 51.6
MD16G1099400 Malus domestica HOM05D003359 ORTHO05D004472 3.6e-54 215.7 221 51.6
Medtr2g096530 Medicago truncatula HOM05D003359 ORTHO05D004472 3.6e-54 215.7 220 47.7
Sp2g15530 Schrenkiella parvula HOM05D003359 ORTHO05D004472 3.6e-54 215.7 221 51.6
Gorai.005G176600 Gossypium raimondii HOM05D003359 ORTHO05D004472 4.6e-54 215.3 218 51.4
Sed0021427 Sechium edule HOM05D003359 ORTHO05D004472 6.1e-54 214.9 219 47.0
TWI18G0898 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 7.9e-54 214.5 220 51.4
MD13G1098300 Malus domestica HOM05D003359 ORTHO05D004472 1.0e-53 214.2 224 50.9
Eucgr.H02480 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.8e-53 213.4 220 51.8
ClCG08G017630 Citrullus lanatus HOM05D003359 ORTHO05D004472 2.3e-53 213.0 219 49.3
Nitab4.5_0002787g0030 Nicotiana tabacum HOM05D003359 ORTHO05D004472 2.3e-53 213.0 219 51.6
Lj3A1060T75 Lonicera japonica HOM05D003359 ORTHO05D004472 3.0e-53 212.6 225 50.7
Glyma.05G174200 Glycine max HOM05D003359 ORTHO05D004472 5.1e-53 211.8 220 47.7
Phvul.001G255500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 6.7e-53 211.5 219 47.5
AL5G15150 Arabidopsis lyrata HOM05D003359 ORTHO05D004472 1.1e-52 210.7 222 50.5
Phvul.002G259200 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 1.1e-52 210.7 220 48.2
Thecc.02G263100 Theobroma cacao HOM05D003359 ORTHO05D004472 1.1e-52 210.7 218 50.0
PGSC0003DMG400011728 Solanum tuberosum HOM05D003359 ORTHO05D004472 1.5e-52 210.3 220 52.7
Aqoxy5G03712 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.9e-52 209.9 219 48.4
Ca_25137_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 3.3e-52 209.1 218 47.7
Thhalv10003806m.g Eutrema salsugineum HOM05D003359 ORTHO05D004472 3.3e-52 209.1 221 49.8
AUR62005500 Chenopodium quinoa HOM05D003359 ORTHO05D004472 4.3e-52 208.8 215 50.2
arahy.Tifrunner.gnm1.ann1.6M8RVH Arachis hypogaea HOM05D003359 ORTHO05D004472 7.4e-52 208.0 219 48.4
Lalb_Chr07g0185431 Lupinus albus HOM05D003359 ORTHO05D004472 7.4e-52 208.0 218 45.9
Eucgr.H02478 Eucalyptus grandis HOM05D003359 ORTHO05D004472 9.7e-52 207.6 221 48.9
Eucgr.H02479 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.3e-51 207.2 219 49.8
Sopen05g008640 Solanum pennellii HOM05D003359 ORTHO05D004472 1.6e-51 206.8 220 52.3
AT3G26380 Arabidopsis thaliana HOM05D003359 ORTHO05D004472 2.2e-51 206.5 222 48.6
arahy.Tifrunner.gnm1.ann1.9A08C8 Arachis hypogaea HOM05D003359 ORTHO05D004472 2.2e-51 206.5 219 47.5
THA.LOC104805279 Tarenaya hassleriana HOM05D003359 ORTHO05D004472 2.2e-51 206.5 222 48.2
CsaV3_2G025010 Cucumis sativus L. HOM05D003359 ORTHO05D004472 2.8e-51 206.1 219 47.0
MD13G1098400 Malus domestica HOM05D003359 ORTHO05D004472 2.8e-51 206.1 221 49.8
A02p34540 Brassica napus HOM05D003359 ORTHO05D004472 3.7e-51 205.7 219 49.8
Glyma.11G243600 Glycine max HOM05D003359 ORTHO05D004472 4.8e-51 205.3 218 45.9
Lj4g0008357 Lotus japonicus HOM05D003359 ORTHO05D004472 4.8e-51 205.3 220 45.9
Lj6g0024639 Lotus japonicus HOM05D003359 ORTHO05D004472 4.8e-51 205.3 219 47.5
Solyc05g013720.3 Solanum lycopersicum HOM05D003359 ORTHO05D004472 4.8e-51 205.3 220 51.8
Medtr8g089745 Medicago truncatula HOM05D003359 ORTHO05D004472 6.3e-51 204.9 222 46.4
TWI36G1577 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 8.2e-51 204.5 216 50.0
BcaB07g30230 Brassica carinata HOM05D003359 ORTHO05D004472 1.1e-50 204.1 222 49.1
BcaC03g17337 Brassica carinata HOM05D003359 ORTHO05D004472 1.1e-50 204.1 221 48.4
Aqoxy3G01254 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.4e-50 203.8 219 47.9
VMungo1383G0093 Vigna mungo HOM05D003359 ORTHO05D004472 4.1e-50 202.2 221 45.7
AUR62024240 Chenopodium quinoa HOM05D003359 ORTHO05D004472 5.3e-50 201.8 215 48.8
EL10Ac6g13871 Beta vulgaris HOM05D003359 ORTHO05D004472 6.9e-50 201.4 215 47.9
CARHR147390 Cardamine hirsuta HOM05D003359 ORTHO05D004472 6.9e-50 201.4 221 48.4
TPR.G6223 Trifolium pratense HOM05D003359 ORTHO05D004472 4.5e-49 198.7 219 48.4
MELO3C010698.2 Cucumis melo HOM05D003359 ORTHO05D004472 5.9e-49 198.4 219 46.6
vmacro16179 Vaccinium macrocarpon HOM05D003359 ORTHO05D004472 7.7e-49 198.0 174 55.7
ATR0824G097 Amborella trichopoda HOM05D003359 ORTHO05D004472 1.0e-48 197.6 218 43.6
Ca_17782_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 1.3e-48 197.2 224 46.9
Medtr3g086580 Medicago truncatula HOM05D003359 ORTHO05D004472 1.3e-48 197.2 220 47.3
Psat5g091760 Pisum sativum HOM05D003359 ORTHO05D004472 1.7e-48 196.8 219 44.3
PSO478G4543 Papaver somniferum HOM05D003359 ORTHO05D004472 2.9e-48 196.1 219 46.1
Medtr8g089740 Medicago truncatula HOM05D003359 ORTHO05D004472 8.5e-48 194.5 222 45.5
Aqoxy5G03710 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.1e-47 194.1 221 45.7
DCAR_029363 Daucus carota HOM05D003359 ORTHO05D004472 1.4e-47 193.7 216 45.8
PSO017G1803 Papaver somniferum HOM05D003359 ORTHO05D004472 1.4e-47 193.7 219 45.7
PGR119G1467 Punica granatum HOM05D003359 ORTHO05D004472 1.4e-47 193.7 218 45.4
TPR.G30530 Trifolium pratense HOM05D003359 ORTHO05D004472 1.4e-47 193.7 219 44.7
C02p52860 Brassica napus HOM05D003359 ORTHO05D004472 3.2e-47 192.6 211 48.3
Lalb_Chr23g0277621 Lupinus albus HOM05D003359 ORTHO05D004472 7.2e-47 191.4 220 44.1
Hund06039 Selenicereus undatus HOM05D003359 ORTHO05D004472 6.1e-46 188.3 262 42.0
arahy.Tifrunner.gnm1.ann1.JIIR6A Arachis hypogaea HOM05D003359 ORTHO05D004472 1.4e-45 187.2 210 45.2
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 2.3e-45 186.4 214 45.3
Psat7g058680 Pisum sativum HOM05D003359 ORTHO05D004472 8.8e-45 184.5 220 42.7
Peaxi162Scf00128g00456 Petunia axillaris HOM05D003359 ORTHO05D004472 2.0e-44 183.3 217 45.6
SGA_v2.0_scaffold71G23972 Striga asiatica HOM05D003359 ORTHO05D004472 3.3e-44 182.6 220 43.6
SalBow2G2300 Salvia bowleyana HOM05D003359 ORTHO05D020488 4.4e-44 182.2 167 53.3
Haze_12269 Corylus avellana HOM05D003359 ORTHO05D006537 5.7e-44 181.8 218 45.4
Sc14g0008780 Simmondsia chinensis HOM05D003359 ORTHO05D004472 1.3e-43 180.6 178 53.9
BolC2t11365H Brassica oleracea HOM05D003359 ORTHO05D004472 3.7e-43 179.1 198 49.5
BraA02t08464Z Brassica rapa HOM05D003359 ORTHO05D004472 1.0e-40 171.0 194 49.5
Nn4g22564 Nelumbo nucifera HOM05D003359 ORTHO05D004472 2.9e-40 169.5 170 51.2
Zm00001eb409230 Zea mays HOM05D003359 ORTHO05D004472 2.1e-38 163.3 218 41.3
Haze_07805 Corylus avellana HOM05D003359 ORTHO05D004472 1.0e-37 161.0 150 54.7
Os01g0518500 Oryza sativa ssp. japonica HOM05D003359 ORTHO05D004472 2.3e-37 159.8 220 40.0
CiPaw.11G025500 Carya illinoinensis HOM05D003359 ORTHO05D004472 8.8e-37 157.9 147 51.7
TPR.G6289 Trifolium pratense HOM05D003359 ORTHO05D004472 8.8e-37 157.9 223 39.0
SGA_v2.0_scaffold100G29574 Striga asiatica HOM05D003359 ORTHO05D004472 5.9e-33 145.2 118 57.6
QL08p013034 Quercus lobata HOM05D003359 ORTHO05D020488 8.0e-30 134.8 114 56.1
Nitab4.5_0000229g0100 Nicotiana tabacum HOM05D003359 ORTHO05D004472 1.0e-29 134.4 162 47.5
arahy.Tifrunner.gnm1.ann1.5678GR Arachis hypogaea HOM05D003359 ORTHO05D004472 1.4e-29 134.0 215 38.6
Dinv14737 Davidia involucrata HOM05D003359 ORTHO05D004472 2.4e-26 123.2 105 57.1
Potri.010G048400 Populus trichocarpa HOM05D003359 ORTHO05D004472 2.4e-26 123.2 125 49.6
Glyma.14G049900 Glycine max HOM05D003359 ORTHO05D004472 9.1e-26 121.3 219 34.2
SEGI_30194 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 2.7e-25 119.8 228 31.1
Phvul.008G214500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 5.0e-24 115.5 217 34.6
QL03p057097 Quercus lobata HOM05D003359 ORTHO05D004472 4.7e-22 109.0 86 59.3
Glyma.18G013500 Glycine max HOM05D003359 ORTHO05D004472 1.0e-21 107.8 130 41.5
Ciclev10003125m.g Citrus clementina HOM05D003359 ORTHO05D004472 4.0e-21 105.9 89 57.3
Glyma.02G267700 Glycine max HOM05D003359 ORTHO05D004472 1.5e-20 104.0 219 32.9
HPP92_023372 Vanilla planifolia HOM05D003359 ORTHO05D004472 9.8e-20 101.3 95 52.6
Lj6C814T12 Lonicera japonica HOM05D003359 ORTHO05D004472 1.7e-19 100.5 86 55.8
Ciclev10033489m.g Citrus clementina HOM05D003359 ORTHO05D004472 2.2e-19 100.1 91 53.8
QL03p057135 Quercus lobata HOM05D003359 ORTHO05D004472 3.7e-19 99.4 86 54.7
QL03p057161 Quercus lobata HOM05D003359 ORTHO05D020488 3.7e-19 99.4 86 54.7
HPP92_023360 Vanilla planifolia HOM05D003359 ORTHO05D004472 6.3e-19 98.6 95 49.5
HPP92_023373 Vanilla planifolia HOM05D003359 ORTHO05D004472 6.3e-19 98.6 95 49.5
Duzib268G0493 Durio zibethinus HOM05D003359 ORTHO05D004472 1.4e-18 97.4 190 37.9
QL03p057114 Quercus lobata HOM05D003359 ORTHO05D020488 3.1e-18 96.3 86 53.5
Migut.K00614 Erythranthe guttata HOM05D003359 ORTHO05D004472 4.1e-18 95.9 111 49.5
QL08p013018 Quercus lobata HOM05D003359 ORTHO05D020488 2.0e-17 93.6 68 64.7
Manes.13G022100 Manihot esculenta HOM05D003359 ORTHO05D004472 2.2e-16 90.1 103 47.6
FvH4_6g05560 Fragaria vesca HOM05D003359 ORTHO05D004472 3.8e-16 89.4 86 50.0
FAN14G4241 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.8e-16 89.4 86 50.0
CAN.G272.4 Capsicum annuum HOM05D003359 ORTHO05D004472 8.5e-16 88.2 81 54.3
FAN05G3491 Fragaria x ananassa HOM05D003359 ORTHO05D004472 1.5e-15 87.4 84 50.0
RcHm_v2.0_Chr3g0454341 Rosa chinensis HOM05D003359 ORTHO05D004472 1.5e-15 87.4 86 50.0
TPR.G15855 Trifolium pratense HOM05D003359 ORTHO05D004472 7.2e-15 85.1 104 41.3
Actinidia15105 Actinidia chinensis HOM05D000434 ORTHO05D008848 1.0e-13 81.3 106 48.1
arahy.Tifrunner.gnm1.ann1.0JE8SP Arachis hypogaea HOM05D006807 ORTHO05D008528 1.4e-13 80.9 69 55.1
Mapoly0033s0125 Marchantia polymorpha HOM05D003359 ORTHO05D004472 4.0e-13 79.3 269 24.5
Medtr8g089725 Medicago truncatula HOM05D003359 ORTHO05D004472 8.8e-13 78.2 80 50.0
PSO067G0007 Papaver somniferum HOM05D003359 ORTHO05D004472 8.8e-13 78.2 85 43.5
Medtr8g089735 Medicago truncatula HOM05D003359 ORTHO05D004472 3.4e-12 76.3 80 48.8
CDE02G4268 Ceratophyllum demersum HOM05D003359 ORTHO05D004472 1.3e-11 74.3 101 39.6
SMO356G0596 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 1.3e-11 74.3 183 27.3
unitig_22.g6428 Utricularia gibba HOM05D003359 ORTHO05D004472 4.9e-11 72.4 99 39.4
VMungo0647G2422 Vigna mungo HOM05D003359 ORTHO05D000417 1.8e-10 70.5 79 44.3
LjContig00029g0017310 Lotus japonicus HOM05D003359 ORTHO05D004472 3.1e-10 69.7 101 41.6
FAN14G5485 Fragaria x ananassa HOM05D003359 ORTHO05D004472 7.0e-10 68.6 72 45.8
Medtr8g089780 Medicago truncatula HOM05D003359 ORTHO05D020488 9.2e-10 68.2 58 56.9
FAN05G1630 Fragaria x ananassa HOM05D003359 ORTHO05D004472 1.6e-09 67.4 72 45.8
Lalb_Chr04g0250101 Lupinus albus HOM05D003359 ORTHO05D004472 3.8e-08 62.8 96 36.5
Glyma.02G267600 Glycine max HOM05D003359 ORTHO05D019577 8.6e-08 61.6 73 43.8
QL03p056989 Quercus lobata HOM05D003359 ORTHO05D004472 8.6e-08 61.6 39 69.2
Pp3c11_18080 Physcomitrium patens HOM05D003359 ORTHO05D004472 2.5e-07 60.1 261 24.5
TWI36G0326 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 4.3e-07 59.3 87 40.2
SEGI_05831 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 5.6e-07 58.9 113 30.1
AagrBONN_evm.TU.Sc2ySwM_228.5836 Anthoceros agrestis HOM05D003359 ORTHO05D004472 2.1e-06 57.0 95 34.7
Mapoly0016s0175 Marchantia polymorpha HOM05D003359 ORTHO05D004472 6.1e-06 55.5 103 32.0


User provided reference genes

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