Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 0.0e+00 1433.3 711 100.0
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 1.4e-288 996.1 712 70.1
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 3.1e-285 984.9 711 68.4
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 5.3e-285 984.2 718 68.1
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 9.1e-285 983.4 717 68.5
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 5.9e-284 980.7 712 68.4
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 7.7e-284 980.3 710 67.9
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 8.5e-283 976.9 710 69.0
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 1.9e-282 975.7 710 67.7
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 2.5e-282 975.3 711 67.8
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 5.5e-282 974.2 718 67.7
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 9.4e-282 973.4 716 67.9
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 2.7e-281 971.8 710 66.8
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 3.6e-281 971.5 710 69.0
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 3.7e-278 961.4 710 67.7
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 1.1e-277 959.9 715 67.6
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 1.8e-277 959.1 710 67.2
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 4.1e-277 958.0 713 67.5
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 7.0e-277 957.2 711 66.5
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 9.1e-277 956.8 713 68.4
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 1.2e-276 956.4 712 65.9
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 2.7e-276 955.3 715 67.0
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 1.0e-275 953.4 709 66.6
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 2.3e-275 952.2 710 66.8
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.3e-275 952.2 719 66.3
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 3.8e-275 951.4 710 66.8
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 5.0e-275 951.0 710 66.8
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 1.1e-274 949.9 716 65.6
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 3.3e-274 948.3 702 67.1
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 3.3e-274 948.3 738 65.7
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 9.5e-274 946.8 719 66.1
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 1.2e-273 946.4 719 66.1
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.6e-273 946.0 710 66.5
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.0e-272 943.3 713 66.6
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 6.8e-272 940.6 716 64.5
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 8.9e-272 940.3 716 66.9
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 9.8e-271 936.8 712 65.9
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.3e-270 934.1 721 65.5
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 1.2e-268 929.9 702 67.0
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 7.8e-268 927.2 716 64.2
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.3e-267 925.6 673 68.9
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 5.0e-267 924.5 711 65.4
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 8.6e-267 923.7 714 65.0
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 1.1e-266 923.3 712 64.9
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.5e-266 922.9 712 66.2
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 3.3e-266 921.8 718 64.3
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.6e-265 919.5 731 64.6
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 4.0e-264 914.8 714 64.4
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 1.2e-263 913.3 707 65.1
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 3.4e-263 911.8 715 64.9
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 7.5e-263 910.6 713 64.5
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 1.7e-262 909.4 708 64.5
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 4.9e-262 907.9 709 64.7
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 4.9e-262 907.9 713 63.7
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 6.4e-262 907.5 708 64.4
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 7.0e-261 904.0 710 64.6
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 2.0e-260 902.5 709 64.7
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.3e-259 899.8 711 62.9
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 1.7e-259 899.4 799 58.2
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 5.0e-259 897.9 713 63.3
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 5.0e-259 897.9 705 64.5
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.1e-258 896.7 734 62.9
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 1.5e-258 896.3 744 61.2
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 4.3e-258 894.8 711 62.4
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.2e-257 893.3 713 61.9
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 2.1e-257 892.5 706 64.0
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 2.8e-257 892.1 706 64.0
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 3.6e-257 891.7 702 63.0
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 4.7e-257 891.3 712 62.4
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 5.2e-256 887.9 708 62.6
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 3.4e-255 885.2 710 62.7
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 1.7e-254 882.9 705 62.1
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.1e-253 880.2 703 62.3
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 2.4e-253 879.0 710 62.4
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 4.1e-253 878.2 703 62.0
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 7.1e-253 877.5 710 62.1
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 9.2e-253 877.1 703 62.2
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 7.8e-252 874.0 708 61.9
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 1.3e-251 873.2 782 56.9
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 6.6e-251 870.9 707 61.4
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 9.5e-250 867.1 704 61.6
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.3e-246 856.7 693 61.6
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 1.7e-246 856.3 704 61.5
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 2.2e-246 855.9 710 60.6
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 4.1e-245 851.7 720 60.3
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 7.8e-244 847.4 704 61.9
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 2.1e-241 839.3 762 55.9
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.8e-238 828.6 560 72.5
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 9.6e-234 813.9 672 59.7
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 5.4e-229 798.1 590 66.8
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.1e-228 796.2 718 57.4
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 7.9e-228 794.3 705 59.7
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 9.0e-224 780.8 600 63.0
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 1.2e-220 770.4 717 57.6
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 1.3e-219 766.9 712 56.6
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 3.0e-219 765.8 717 55.2
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 6.2e-209 731.5 551 66.6
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 1.8e-195 686.8 702 51.1
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 3.3e-194 682.6 526 65.6
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 9.1e-184 647.9 699 48.1
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 7.7e-175 618.2 744 48.9
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 1.1e-173 614.4 701 47.6
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 5.9e-167 592.0 684 46.9
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 9.4e-165 584.7 879 39.2
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.6e-159 567.4 443 62.5
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 2.5e-157 560.1 499 55.3
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 1.7e-153 547.4 842 38.5
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 2.3e-142 510.4 378 64.8
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 1.4e-131 474.6 758 38.1
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.2e-127 461.5 735 38.5
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 1.6e-116 424.5 720 36.0
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 3.6e-116 423.3 815 35.0
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 3.1e-115 420.2 747 37.2
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.1e-103 380.9 356 56.5
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 9.6e-101 372.1 334 61.7
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.5e-96 357.5 298 61.1
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 7.0e-67 259.6 270 51.5
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 4.7e-63 246.9 205 59.5
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 2.6e-53 214.5 195 58.5
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 8.5e-49 199.5 176 59.1
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 5.5e-48 196.8 168 57.7
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 4.1e-35 154.1 112 68.8
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 9.5e-32 142.9 101 68.3
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 6.8e-30 136.7 122 54.9
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 1.2e-29 136.0 173 48.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 1.4e-22 112.5 98 52.0
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 3.4e-21 107.8 100 53.0
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 3.7e-20 104.4 146 42.5
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 7.1e-19 100.1 79 59.5
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 1.1e-16 92.8 61 72.1
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 8.1e-15 86.7 57 66.7
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 7.8e-10 70.1 41 73.2
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.0e-09 69.7 62 56.5
Peaxi162Scf00134g02031 Petunia axillaris HOM05D004849 ORTHO05D005955 6.2e-07 60.5 77 41.6
Prupe.1G153200 Prunus persica HOM05D004849 ORTHO05D005955 8.1e-07 60.1 109 34.9
AL6G30630 Arabidopsis lyrata HOM05D004849 ORTHO05D005955 1.4e-06 59.3 77 40.3
Actinidia23503 Actinidia chinensis HOM05D004849 ORTHO05D005955 2.4e-06 58.5 77 40.3
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 3.1e-06 58.2 48 56.2
Carub.0006s1751 Capsella rubella HOM05D004849 ORTHO05D005955 3.1e-06 58.2 77 39.0
RcHm_v2.0_Chr4g0417521 Rosa chinensis HOM05D004849 ORTHO05D005955 3.1e-06 58.2 77 40.3
HPP92_001335 Vanilla planifolia HOM05D004849 ORTHO05D005955 3.1e-06 58.2 77 42.9
CANSAT78G0899 Cannabis sativa HOM05D004849 ORTHO05D005955 4.0e-06 57.8 77 37.7
CARHR193770 Cardamine hirsuta HOM05D004849 ORTHO05D005955 4.0e-06 57.8 77 39.0
CDE05G3222 Ceratophyllum demersum HOM05D004849 ORTHO05D005955 4.0e-06 57.8 77 39.0
CDE11G0641 Ceratophyllum demersum HOM05D004849 ORTHO05D005955 4.0e-06 57.8 77 39.0
unitig_748.g8344 Utricularia gibba HOM05D004849 ORTHO05D005955 4.0e-06 57.8 77 39.0
MD13G1185500 Malus domestica HOM05D004849 ORTHO05D005955 5.2e-06 57.4 77 39.0
PSO170G1707 Papaver somniferum HOM05D004849 ORTHO05D005955 5.2e-06 57.4 111 33.3
ATR0626G348 Amborella trichopoda HOM05D004849 ORTHO05D005955 6.9e-06 57.0 77 37.7
Aqoxy2G03291 Aquilegia oxysepala HOM05D004849 ORTHO05D005955 9.0e-06 56.6 76 39.5
FAN07G1248 Fragaria x ananassa HOM05D004849 ORTHO05D005955 9.0e-06 56.6 77 39.0
Glyma.07G258000 Glycine max HOM05D004849 ORTHO05D005955 9.0e-06 56.6 87 35.6
SalBow2G0641 Salvia bowleyana HOM05D004849 ORTHO05D005955 9.0e-06 56.6 77 36.4


User provided reference genes

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