Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 2.4e-231 805.1 389 100.0
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 6.6e-152 541.2 381 69.0
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 6.6e-152 541.2 384 69.5
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 8.6e-152 540.8 388 68.6
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 3.3e-151 538.9 375 70.1
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 2.1e-150 536.2 385 68.1
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 2.8e-150 535.8 381 68.5
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 1.8e-149 533.1 388 68.3
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 3.0e-149 532.3 383 68.1
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 8.9e-149 530.8 383 67.9
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 1.2e-148 530.4 394 66.8
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 2.6e-148 529.3 388 67.3
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 5.7e-148 528.1 394 66.5
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 1.1e-146 523.9 386 66.8
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 1.8e-146 523.1 390 66.7
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 4.1e-146 521.9 389 64.5
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 1.6e-145 520.0 386 66.6
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 3.5e-145 518.8 382 67.3
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 7.8e-145 517.7 382 66.0
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 7.8e-145 517.7 393 64.9
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 3.9e-144 515.4 378 66.7
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 5.0e-144 515.0 382 66.0
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 5.0e-144 515.0 391 65.5
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 1.5e-143 513.5 386 65.0
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 1.9e-143 513.1 386 65.5
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 3.3e-143 512.3 383 65.5
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 5.6e-143 511.5 378 66.4
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 9.5e-143 510.8 385 65.5
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 3.6e-142 508.8 384 65.1
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 4.7e-142 508.4 381 65.9
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 3.1e-141 505.8 382 67.3
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 3.1e-141 505.8 373 66.0
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 3.1e-141 505.8 377 66.8
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 5.2e-141 505.0 407 64.6
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 5.2e-141 505.0 376 66.5
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 6.8e-141 504.6 374 66.8
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 6.8e-141 504.6 384 65.1
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 8.9e-141 504.2 401 64.6
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 1.5e-140 503.4 383 65.0
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.5e-140 503.4 380 64.5
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 2.6e-140 502.7 389 66.1
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 3.4e-140 502.3 380 64.5
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 4.4e-140 501.9 394 64.7
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 4.4e-140 501.9 395 64.1
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 7.5e-140 501.1 372 65.6
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 1.3e-139 500.4 358 68.4
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.2e-139 499.6 392 65.3
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 2.9e-139 499.2 380 64.7
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 4.9e-139 498.4 391 63.4
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 8.3e-139 497.7 375 66.7
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 1.2e-137 493.8 376 66.2
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 3.5e-137 492.3 379 64.9
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 4.6e-137 491.9 376 65.7
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 6.0e-137 491.5 374 66.0
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 1.0e-136 490.7 386 63.5
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.0e-136 490.7 383 64.5
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 2.3e-136 489.6 386 63.2
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 6.6e-136 488.0 385 64.7
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 8.6e-136 487.6 377 64.7
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 2.8e-134 482.6 379 64.1
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 2.8e-134 482.6 378 64.6
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 3.6e-134 482.3 386 63.0
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 5.2e-133 478.4 396 61.4
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.3e-131 473.8 380 62.9
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 1.4e-130 470.3 382 62.0
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 3.9e-128 462.2 387 61.0
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 6.6e-128 461.5 385 59.0
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 1.9e-127 459.9 344 66.9
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 7.3e-127 458.0 353 64.3
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 8.9e-125 451.1 384 60.9
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.7e-123 445.7 381 60.4
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 7.8e-121 438.0 343 63.3
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 1.0e-120 437.6 377 58.9
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 5.1e-120 435.3 352 62.2
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 4.4e-116 422.2 369 59.1
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 8.7e-112 407.9 453 50.6
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 5.6e-111 405.2 294 67.3
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 9.6e-111 404.4 324 62.0
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 7.1e-106 388.3 316 62.0
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 3.5e-105 386.0 377 53.1
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 1.7e-104 383.6 464 46.1
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 3.9e-104 382.5 312 62.5
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 5.8e-100 368.6 386 51.3
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 1.3e-99 367.5 348 53.7
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.3e-96 357.5 324 57.7
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 1.5e-95 354.0 288 61.1
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 2.1e-94 350.1 294 61.2
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 3.8e-91 339.3 372 53.0
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 1.3e-88 330.9 539 40.1
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 1.1e-79 301.2 280 54.6
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 9.7e-79 298.1 369 48.8
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 1.1e-77 294.7 241 61.0
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.1e-74 284.6 268 55.6
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 9.4e-74 281.6 281 54.8
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 2.3e-72 276.9 166 80.1
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 3.9e-72 276.2 265 56.6
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 7.4e-71 271.9 172 75.0
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 2.2e-70 270.4 318 47.8
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 4.1e-69 266.2 342 45.9
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 1.4e-66 257.7 385 39.2
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 1.6e-65 254.2 444 36.3
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 5.7e-63 245.7 159 73.6
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 1.7e-59 234.2 252 50.8
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 8.5e-59 231.9 216 56.0
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 3.4e-47 193.4 403 35.5
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 1.4e-45 188.0 396 33.1
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 1.5e-42 177.9 195 48.2
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 5.5e-42 176.0 125 68.0
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 4.4e-39 166.4 111 69.4
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 5.9e-36 156.0 307 35.2
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 7.5e-31 139.0 82 78.0
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 2.2e-30 137.5 175 41.7
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 7.0e-29 132.5 84 72.6
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.7e-27 127.9 141 45.4
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 3.3e-26 123.6 94 63.8
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.2e-25 121.7 175 44.6
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 3.7e-22 110.2 80 67.5
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 6.0e-20 102.8 68 72.1
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.7e-19 101.3 63 71.4
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 3.3e-18 97.1 61 73.8
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 8.1e-17 92.4 70 67.1
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.4e-15 87.0 50 74.0
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.4e-15 87.0 50 74.0
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 7.5e-15 85.9 120 38.3
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.3e-14 85.1 56 66.1
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 3.3e-10 70.5 89 40.4
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 2.1e-09 67.8 61 59.0
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 3.6e-09 67.0 54 64.8
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 8.9e-08 62.4 39 69.2
PRCOL_00004583 Prasinoderma coloniale HOM05D000064 ORTHO05D025009 1.2e-07 62.0 364 22.5


User provided reference genes

Program Settings