Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 4.3e-175 617.8 306 100.0
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 3.7e-134 481.9 306 76.5
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 6.3e-134 481.1 306 76.5
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 8.3e-134 480.7 304 76.3
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.1e-133 480.3 307 77.5
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.6e-132 476.5 307 76.5
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 2.3e-131 472.6 306 75.8
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 2.3e-131 472.6 306 75.8
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 6.6e-131 471.1 309 74.4
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 4.2e-130 468.4 306 75.2
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 5.5e-130 468.0 307 75.2
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.6e-129 466.5 306 74.8
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 4.7e-129 464.9 306 74.5
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 3.0e-128 462.2 302 74.2
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 5.2e-128 461.5 306 73.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 2.0e-127 459.5 306 74.2
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 2.0e-127 459.5 306 74.2
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.6e-127 459.1 306 73.5
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 3.4e-127 458.8 306 73.5
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 5.7e-127 458.0 307 73.6
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 5.7e-127 458.0 306 73.2
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 5.7e-127 458.0 306 72.2
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.3e-126 456.8 306 73.5
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 3.7e-126 455.3 351 65.5
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 3.7e-126 455.3 306 72.9
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 1.1e-125 453.8 306 71.9
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 3.1e-125 452.2 321 70.1
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 3.1e-125 452.2 306 73.2
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 3.1e-125 452.2 306 73.2
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 5.4e-125 451.4 306 73.2
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 9.2e-125 450.7 306 72.2
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 1.2e-124 450.3 309 73.5
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 4.5e-124 448.4 304 71.4
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.0e-123 447.2 308 71.8
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.7e-123 446.4 307 72.3
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 3.8e-123 445.3 306 72.2
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 2.5e-122 442.6 306 71.9
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 3.3e-122 442.2 308 70.1
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 3.3e-122 442.2 306 69.3
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 3.3e-122 442.2 305 71.5
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 9.5e-122 440.7 300 72.0
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 1.2e-121 440.3 304 70.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 2.1e-121 439.5 311 71.4
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 8.0e-121 437.6 287 74.6
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.8e-120 436.4 278 75.9
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 1.8e-120 436.4 306 70.6
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 2.3e-120 436.0 301 70.8
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 3.1e-120 435.6 300 72.3
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 8.9e-120 434.1 306 70.3
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 1.5e-119 433.3 304 69.4
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 5.8e-119 431.4 306 69.3
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 1.9e-117 426.4 306 69.6
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 7.0e-117 424.5 306 68.3
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 7.0e-117 424.5 305 67.5
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 7.0e-117 424.5 307 67.8
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.2e-116 423.7 306 67.6
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 2.0e-116 422.9 331 64.4
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 6.0e-116 421.4 305 67.5
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 6.0e-116 421.4 305 67.5
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 6.0e-116 421.4 304 68.1
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.7e-115 419.9 305 67.5
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.3e-115 419.5 303 68.3
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 1.5e-114 416.8 274 74.1
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.6e-114 414.8 293 71.3
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.6e-113 413.3 306 67.0
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.6e-113 413.3 294 69.7
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.6e-113 413.3 306 67.0
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.6e-113 412.1 306 67.0
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 3.6e-113 412.1 306 67.0
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 6.2e-113 411.4 293 70.6
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 8.0e-113 411.0 305 66.6
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 3.1e-112 409.1 288 70.5
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.1e-112 409.1 293 70.3
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 6.8e-112 407.9 306 69.9
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 6.8e-112 407.9 293 70.0
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 8.9e-112 407.5 250 76.8
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 8.9e-112 407.5 278 73.7
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 1.2e-111 407.1 305 66.2
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 2.6e-111 406.0 271 72.7
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 2.6e-111 406.0 317 65.6
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.9e-110 402.5 343 60.3
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 4.9e-110 401.7 286 67.8
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 2.4e-109 399.4 306 65.4
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 2.4e-109 399.4 330 60.9
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 5.4e-109 398.3 306 64.7
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 4.6e-108 395.2 294 65.3
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.3e-107 393.7 284 68.0
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.9e-107 392.1 356 57.6
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 5.6e-106 388.3 305 65.2
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.6e-105 386.7 287 65.2
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 2.2e-102 376.3 280 68.2
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.2e-101 372.5 270 70.0
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 2.1e-100 369.8 305 61.3
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 2.7e-100 369.4 305 61.3
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.6e-98 361.7 252 71.4
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 6.8e-96 354.8 287 62.0
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.2e-94 349.7 282 59.2
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 5.6e-90 335.1 242 66.9
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.4e-88 329.7 290 57.6
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 9.0e-88 327.8 306 58.5
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 7.6e-87 324.7 290 57.6
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.3e-83 313.9 281 57.7
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.3e-83 313.9 239 64.0
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 1.4e-77 293.9 286 52.4
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 7.4e-74 281.6 312 49.0
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 1.0e-70 271.2 291 49.1
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 1.3e-70 270.8 191 67.5
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.4e-69 267.3 331 44.1
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 9.3e-69 264.6 205 63.9
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.3e-67 260.8 293 47.8
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.3e-65 254.2 306 48.7
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.8e-65 253.1 285 48.8
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.5e-58 230.7 140 76.4
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 5.3e-56 222.2 156 71.8
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 6.7e-51 205.3 278 42.8
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 2.6e-42 176.8 258 40.7
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 1.7e-41 174.1 344 34.0
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 2.0e-34 150.6 376 30.1
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.8e-33 146.7 136 61.0
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 4.1e-32 142.9 124 62.1
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 4.5e-31 139.4 191 46.1
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 8.5e-30 135.2 97 67.0
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.2e-23 114.8 177 37.9
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.1e-21 108.2 102 54.9
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 1.3e-14 84.7 67 59.7
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.9e-13 80.9 95 45.3
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 5.2e-11 72.8 54 63.0
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 3.4e-10 70.1 65 63.1
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.2e-09 67.4 95 37.9
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.1e-08 63.2 61 45.9


User provided reference genes

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