Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 6.9e-68 260.4 121 100.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 2.2e-61 238.8 113 95.6
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 4.8e-61 237.7 113 96.5
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 1.8e-60 235.7 113 94.7
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 7.0e-60 233.8 112 95.5
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 1.2e-59 233.0 116 92.2
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 1.2e-59 233.0 117 88.9
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.2e-59 233.0 113 94.7
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 1.2e-59 233.0 121 87.6
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 2.0e-59 232.3 110 95.5
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 2.0e-59 232.3 112 93.8
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 4.5e-59 231.1 112 93.8
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 4.5e-59 231.1 112 91.1
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 4.5e-59 231.1 112 91.1
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 4.5e-59 231.1 113 93.8
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 5.9e-59 230.7 112 91.1
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 7.7e-59 230.3 120 85.8
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.3e-58 229.6 113 92.9
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 1.3e-58 229.6 111 92.8
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 2.9e-58 228.4 117 88.0
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 5.0e-58 227.6 116 89.7
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 5.0e-58 227.6 116 89.7
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 5.0e-58 227.6 112 92.0
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 6.5e-58 227.3 117 87.2
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 6.5e-58 227.3 117 87.2
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 1.5e-57 226.1 117 86.3
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 1.5e-57 226.1 112 91.1
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 2.5e-57 225.3 112 92.0
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 3.2e-57 224.9 112 92.0
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 4.2e-57 224.6 112 89.3
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 5.5e-57 224.2 121 86.8
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 5.5e-57 224.2 112 89.3
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 5.5e-57 224.2 112 89.3
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 7.2e-57 223.8 120 83.3
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 7.2e-57 223.8 112 91.1
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 7.2e-57 223.8 112 91.1
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 7.2e-57 223.8 112 91.1
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.6e-56 222.6 117 86.3
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 2.1e-56 222.2 104 97.1
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 2.1e-56 222.2 113 90.3
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 2.7e-56 221.9 112 87.5
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 3.6e-56 221.5 121 86.0
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 4.7e-56 221.1 116 86.2
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 4.7e-56 221.1 112 89.3
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 4.7e-56 221.1 116 86.2
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 6.1e-56 220.7 113 90.3
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 6.1e-56 220.7 112 88.4
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 1.0e-55 219.9 121 86.8
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 1.4e-55 219.5 116 87.1
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 1.8e-55 219.2 118 85.6
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 2.3e-55 218.8 110 90.0
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 2.3e-55 218.8 117 84.6
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 2.3e-55 218.8 117 82.1
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 3.0e-55 218.4 116 85.3
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 3.0e-55 218.4 112 87.5
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 4.0e-55 218.0 116 84.5
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 6.7e-55 217.2 116 83.6
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.5e-54 216.1 112 84.8
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 2.0e-54 215.7 112 83.9
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.6e-54 215.3 112 86.6
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 7.5e-54 213.8 112 83.9
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 7.5e-54 213.8 112 83.9
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 7.5e-54 213.8 113 86.7
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 7.5e-54 213.8 112 83.9
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 9.7e-54 213.4 112 83.0
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 9.7e-54 213.4 112 83.0
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 9.7e-54 213.4 117 82.9
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 9.7e-54 213.4 114 83.3
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 9.7e-54 213.4 114 83.3
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.7e-53 212.6 112 83.0
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.7e-53 212.6 112 83.0
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 1.7e-53 212.6 110 84.5
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 2.8e-53 211.8 112 85.7
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 6.3e-53 210.7 112 82.1
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 6.3e-53 210.7 112 81.2
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 8.2e-53 210.3 113 81.4
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 8.2e-53 210.3 112 81.2
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 1.1e-52 209.9 112 82.1
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 1.4e-52 209.5 112 82.1
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 1.4e-52 209.5 112 82.1
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 1.4e-52 209.5 112 82.1
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 1.4e-52 209.5 112 82.1
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 2.4e-52 208.8 113 81.4
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 2.4e-52 208.8 112 81.2
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 3.1e-52 208.4 112 82.1
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 4.1e-52 208.0 111 84.7
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 5.3e-52 207.6 112 81.2
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 7.0e-52 207.2 113 80.5
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 7.0e-52 207.2 113 80.5
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 7.0e-52 207.2 113 80.5
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 9.1e-52 206.8 95 97.9
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 1.6e-51 206.1 110 81.8
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 2.0e-51 205.7 95 96.8
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 3.5e-51 204.9 104 90.4
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 4.5e-51 204.5 112 80.4
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 5.9e-51 204.1 97 94.8
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 7.7e-51 203.8 110 81.8
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 7.7e-51 203.8 110 81.8
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 7.7e-51 203.8 114 78.1
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.0e-50 203.4 148 67.6
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 1.3e-50 203.0 112 79.5
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 2.9e-50 201.8 112 80.4
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 3.8e-50 201.4 116 80.2
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 5.0e-50 201.1 110 82.7
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 6.5e-50 200.7 103 87.4
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 6.5e-50 200.7 116 80.2
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 6.5e-50 200.7 116 80.2
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 6.5e-50 200.7 116 80.2
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 6.5e-50 200.7 116 80.2
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 6.5e-50 200.7 116 80.2
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 8.5e-50 200.3 111 76.6
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 1.5e-49 199.5 106 86.8
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 1.9e-49 199.1 110 80.0
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.2e-49 198.0 117 75.2
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.2e-49 198.0 117 75.2
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 2.7e-48 195.3 95 92.6
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 4.7e-48 194.5 97 89.7
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 3.0e-47 191.8 95 88.4
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.0e-46 189.1 116 77.6
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 7.5e-46 187.2 119 68.9
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 9.8e-46 186.8 118 69.5
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 2.2e-45 185.7 92 90.2
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 3.1e-44 181.8 143 60.1
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 7.0e-44 180.6 106 72.6
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.6e-43 179.5 108 68.5
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 2.9e-42 175.3 123 67.5
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 5.0e-42 174.5 111 68.5
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 1.5e-41 172.9 147 57.8
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 2.5e-41 172.2 108 68.5
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 9.5e-41 170.2 106 67.0
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.4e-39 166.4 97 75.3
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 1.8e-39 166.0 84 88.1
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 5.2e-39 164.5 83 91.6
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 2.0e-38 162.5 83 86.7
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 7.5e-38 160.6 75 93.3
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.2e-37 159.1 75 94.7
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 2.4e-36 155.6 75 89.3
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 6.6e-34 147.5 75 84.0
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 7.3e-33 144.1 74 85.1
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 4.0e-31 138.3 101 54.5
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.3e-29 133.3 95 71.6
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 1.7e-29 132.9 100 70.0
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 2.9e-29 132.1 92 59.8
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 3.0e-26 122.1 95 51.6
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.9e-25 119.4 79 74.7
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.1e-24 115.9 80 70.0
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 2.6e-22 109.0 98 56.1
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 2.6e-22 109.0 98 56.1
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 2.6e-22 109.0 98 56.1
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 3.0e-18 95.5 98 42.9
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 3.0e-18 95.5 57 71.9
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 1.9e-17 92.8 57 75.4
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 7.3e-17 90.9 155 38.7
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 4.7e-16 88.2 88 43.2
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 2.6e-14 82.4 76 57.9
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 3.4e-14 82.0 41 90.2
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 1.2e-11 73.6 82 40.2
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 4.6e-11 71.6 38 86.8
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 5.1e-10 68.2 79 49.4


User provided reference genes

Program Settings