Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 3.2e-184 648.3 331 100.0
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 1.1e-112 410.6 334 64.1
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 2.5e-107 392.9 329 60.2
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 2.5e-107 392.9 330 61.2
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.2e-106 390.6 331 60.4
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 1.0e-105 387.5 357 56.3
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 1.1e-104 384.0 331 60.1
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 4.3e-104 382.1 334 60.2
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 2.0e-101 373.2 334 59.0
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 3.4e-101 372.5 330 59.4
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 1.4e-99 367.1 335 58.5
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 2.1e-98 363.2 332 60.2
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 7.9e-98 361.3 360 54.2
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 7.9e-98 361.3 335 58.5
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 8.7e-97 357.8 330 56.4
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 8.7e-97 357.8 331 56.2
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 1.1e-96 357.5 330 57.9
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 1.4e-94 350.5 334 56.6
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 1.4e-94 350.5 329 58.1
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 5.3e-94 348.6 334 55.1
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 6.9e-94 348.2 351 56.4
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 2.0e-93 346.7 321 56.7
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 2.0e-93 346.7 330 55.8
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 7.7e-93 344.7 328 55.8
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 2.9e-92 342.8 333 53.8
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 5.0e-92 342.0 311 57.2
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 2.5e-91 339.7 330 56.7
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 2.7e-90 336.3 337 53.7
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 7.9e-90 334.7 314 55.4
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 1.0e-89 334.3 329 55.6
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 1.8e-89 333.6 331 53.5
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 2.3e-89 333.2 330 55.8
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 5.1e-89 332.0 330 55.8
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 1.5e-88 330.5 333 54.4
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 1.3e-87 327.4 328 53.0
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 2.2e-87 326.6 355 52.1
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 2.8e-87 326.2 329 52.9
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 4.8e-87 325.5 331 55.6
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 8.2e-87 324.7 331 54.7
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 1.4e-86 323.9 332 54.8
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 2.4e-86 323.2 332 52.7
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 3.1e-86 322.8 332 52.7
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 1.2e-85 320.9 332 48.8
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 1.2e-85 320.9 381 48.6
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 1.2e-85 320.9 342 52.6
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 3.4e-85 319.3 331 53.5
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 7.7e-85 318.2 333 54.1
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 1.7e-84 317.0 333 52.0
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 2.9e-84 316.2 333 52.9
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 3.8e-84 315.8 333 52.9
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 6.5e-84 315.1 329 52.0
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 1.1e-83 314.3 334 51.2
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 3.6e-82 309.3 335 50.1
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 6.1e-82 308.5 335 51.9
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 7.9e-82 308.1 334 51.2
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 8.8e-81 304.7 333 51.1
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 1.1e-80 304.3 329 51.7
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 1.1e-80 304.3 333 51.1
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.1e-80 304.3 333 51.1
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 1.1e-80 304.3 341 50.4
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 2.6e-80 303.1 325 50.5
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 9.7e-80 301.2 339 49.6
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 7.0e-78 295.0 347 50.1
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 2.0e-77 293.5 344 50.0
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 2.2e-76 290.0 326 50.3
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 5.0e-76 288.9 311 50.2
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 3.2e-75 286.2 281 56.6
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 7.2e-75 285.0 290 53.1
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 2.1e-74 283.5 335 50.1
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 3.6e-74 282.7 333 46.2
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 2.3e-73 280.0 329 48.0
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 1.5e-72 277.3 328 48.2
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 3.3e-72 276.2 290 51.4
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 4.1e-70 269.2 270 53.3
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 9.1e-70 268.1 309 48.9
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 2.0e-69 266.9 338 48.5
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 3.5e-69 266.2 330 45.8
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 2.5e-67 260.0 313 47.0
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 1.2e-66 257.7 259 52.5
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 1.2e-66 257.7 338 45.9
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 6.1e-66 255.4 202 62.4
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 1.4e-65 254.2 358 44.1
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 3.0e-65 253.1 330 43.3
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 6.8e-65 251.9 338 42.0
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 6.8e-65 251.9 338 42.0
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 1.2e-64 251.1 330 45.2
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 1.2e-64 251.1 336 44.9
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 2.0e-64 250.4 330 42.7
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 3.4e-64 249.6 350 43.1
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 1.3e-63 247.7 350 43.1
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 1.7e-63 247.3 330 43.6
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 1.7e-63 247.3 338 41.4
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 4.8e-63 245.7 337 43.3
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 3.1e-62 243.0 208 58.7
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 7.0e-62 241.9 344 43.9
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 2.0e-61 240.4 217 55.3
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 2.2e-60 236.9 277 49.5
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 3.8e-60 236.1 249 53.0
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 4.2e-59 232.6 363 38.6
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 1.2e-58 231.1 237 51.1
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 5.7e-56 222.2 276 45.7
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 5.4e-54 215.7 246 48.8
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 7.0e-54 215.3 273 45.1
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 1.6e-53 214.2 270 46.3
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 7.7e-53 211.8 275 44.4
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 3.7e-47 193.0 204 48.0
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 2.4e-46 190.3 211 46.0
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 1.1e-43 181.4 208 50.5
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 4.3e-43 179.5 193 53.4
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.2e-42 177.9 203 46.3
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 2.6e-40 170.2 207 45.4
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 3.4e-40 169.9 202 44.6
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 7.5e-40 168.7 203 47.8
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 4.9e-39 166.0 199 44.7
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.9e-38 164.1 202 44.1
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 7.0e-38 162.2 158 51.9
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.3e-36 157.1 143 55.9
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 5.0e-36 156.0 203 43.8
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 1.2e-34 151.4 139 56.8
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 1.2e-34 151.4 202 41.1
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 1.4e-33 147.9 127 57.5
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 4.0e-25 119.8 179 39.7
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 8.9e-17 92.0 80 57.5
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 2.9e-15 87.0 88 56.8
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 3.0e-12 77.0 204 30.9
Cre01.g021850 Chlamydomonas reinhardtii HOM05D005236 ORTHO05D006557 8.1e-10 68.9 167 34.7


User provided reference genes

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